Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_M19
(545 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos... 29 0.59
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy... 27 1.4
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre... 27 2.4
SPAC22G7.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.4
SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3... 27 2.4
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 3.2
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 26 3.2
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S... 26 4.2
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 26 4.2
SPAC3G6.10c |||GARP complex subunit Vps51 |Schizosaccharomyces p... 25 5.5
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ... 25 7.3
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 7.3
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 25 7.3
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 25 9.6
>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 532
Score = 28.7 bits (61), Expect = 0.59
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -2
Query: 541 SRTPPSSILYAVPAPTAGSGVSP--PSSLKGVPSISP 437
S T PSS + +P PT S +SP P S+ G S +P
Sbjct: 312 SITSPSSSVGQIPQPTDHSALSPSKPMSISGTESPNP 348
>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 384
Score = 27.5 bits (58), Expect = 1.4
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 7/81 (8%)
Frame = +3
Query: 111 KRPHELDTWRYTARNHIMYVP----SGAASQQATPKSELVHRNTRLT---VAPFDHNKNK 269
++ + TW Y +N +MY P S + SQ +E+ T L+ + +
Sbjct: 180 EKDKSIKTWNYQPKNALMYTPETNHSSSLSQIKKQSTEIQADATGLSQSFLEAANQPSTD 239
Query: 270 QVISAIARTQDASVNGKIGVD 332
++ DASVNG VD
Sbjct: 240 PIVPPSVNETDASVNGYPLVD 260
>SPBC19C2.09 |sre1||sterol regulatory element binding protein
Sre1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 900
Score = 26.6 bits (56), Expect = 2.4
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Frame = -2
Query: 544 RSRTPPSSILYAVPAPTAGSGVSP----PSSLKGVPSISPQVINGEQSPSSP 401
+S P S+ A PA + SP P+S+ +PS SP + + S S+P
Sbjct: 2 QSSIPSVSVSVASPAMETPTKASPDSKSPNSVGAIPSSSPLASSTKASTSTP 53
>SPAC22G7.03 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 236
Score = 26.6 bits (56), Expect = 2.4
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -1
Query: 356 FLRSQADPVHAYLTVNACILCPCNGADDLFVLVVVEGSHSQ 234
FL +A +H + L PC+ DDL +V V H++
Sbjct: 75 FLAKEAYSIHFQSVLERIQLIPCSHVDDLEKIVEVRLKHAK 115
>SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 455
Score = 26.6 bits (56), Expect = 2.4
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Frame = +3
Query: 159 IMYVPSGAASQQATPKSELVHRNTRLTVAPFD---HNKN-KQVISAIARTQDASVNGKIG 326
I Y+ S S +++P E NT + + NK+ K V A A T++
Sbjct: 278 ISYLTSTTTSTKSSPVPESTTTNTTEVLKELNDIQENKSRKNVEKATAATEEMLRGHHKP 337
Query: 327 VDGVSLTSEKPS 362
V+G + TSEK S
Sbjct: 338 VEGTTATSEKES 349
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.2 bits (55), Expect = 3.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 529 PSSILYAVPAPTAGSGVSPPSSLKGVPSIS 440
PSS + ++PAP+ V PS + VP S
Sbjct: 1069 PSSEIPSIPAPSGAPPVPAPSGIPPVPKPS 1098
Score = 24.6 bits (51), Expect = 9.6
Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = -2
Query: 529 PSSILYAVPAPTAG-SGVSPPSSLKGVPSIS 440
PSS + VP P AG V PPS VP S
Sbjct: 1174 PSSGIPPVPKPAAGVPPVPPPSEAPPVPKPS 1204
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 26.2 bits (55), Expect = 3.2
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3
Query: 165 YVPSGAASQQATPKSELVHRNT-RLTVAPFDHNKNKQVISAIARTQDASVNGKIGVDGVS 341
++P + SQ +P + +H + + +NKQ++S + T+D GK V ++
Sbjct: 27 HLPKASPSQSQSPVNTSLHNGDGKDNGVATEPVENKQILSERSVTRDDYEKGKTIVSSLA 86
Query: 342 LTS 350
L+S
Sbjct: 87 LSS 89
>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 25.8 bits (54), Expect = 4.2
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +3
Query: 444 IEGTPFRLDGGDTPLPAVGAGTAYRMLEGGVRER 545
++ + FRL D P+ VG GT G V ER
Sbjct: 519 VKKSTFRLAPPDVPIIMVGPGTGVAPFRGFVMER 552
>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 25.8 bits (54), Expect = 4.2
Identities = 13/60 (21%), Positives = 25/60 (41%)
Frame = -1
Query: 356 FLRSQADPVHAYLTVNACILCPCNGADDLFVLVVVEGSHSQTCVPMH*FRFRSGLLRCRP 177
+LR + + + + T + +LC G +F LV + + P R ++ C P
Sbjct: 229 YLRQKPEELFIFTTKFSIVLCAYMGNSQIFPLVSSKNCFEEPITPRFQALHRINMIECIP 288
>SPAC3G6.10c |||GARP complex subunit Vps51 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 159
Score = 25.4 bits (53), Expect = 5.5
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 444 SRPRSSTVNSHRRPRGAATVSPPAST 367
S SSTV++ R+P + TVSP T
Sbjct: 18 SNSSSSTVSTTRKPSSSNTVSPVEET 43
>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 304 ASCVLAMALMTCLFLLWSKGATVRRVFRCTSSD 206
ASC L +++T LF SKG T+ + SD
Sbjct: 438 ASCNLCASIVTFLFAHESKGLTLEEINELYLSD 470
>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 681
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -2
Query: 535 TPPSSILYAVPAPTAGSGVSPPSSLKGVPSISPQVINGEQSPS 407
+PPS+ P+P G + PS + PS+S + + S S
Sbjct: 300 SPPSANTVGNPSPADTPGFNVPSLISDDPSVSSSLSSSVASLS 342
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 25.0 bits (52), Expect = 7.3
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = -2
Query: 535 TPPSSILYAVPAPTAGSGVSPPSSLK---GVPSISPQVINGEQSPSSPGRGDGVAT 377
TPPSSI VP P S + P S++K P ++ ++ ++ ++P + V +
Sbjct: 343 TPPSSITQQVPFP---STIIPESTVKENSTRPYVNSHLVANDKITATPFHSEAVVS 395
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 24.6 bits (51), Expect = 9.6
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = -2
Query: 532 PPSSILYAVPAPTAGSGVSPPSSLKGVPSI--SPQVINGEQSPSSP 401
P S+ ++P P G PP + PS P ++ ++ S+P
Sbjct: 343 PRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNP 388
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,814,370
Number of Sequences: 5004
Number of extensions: 34544
Number of successful extensions: 140
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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