Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_M19
(545 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0178 + 17594062-17595576 57 8e-09
03_05_0781 + 27654764-27655429,27655902-27656004,27656535-276565... 32 0.34
03_05_0173 + 21502765-21504216 31 0.45
06_03_1146 - 28004896-28005554,28005664-28005844 31 0.60
03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,662... 31 0.60
07_03_0689 + 20711313-20711906,20713224-20713860,20713946-20714049 30 1.0
08_01_0781 + 7570485-7570796,7570808-7570885,7570963-7571562 30 1.4
02_03_0103 + 15244812-15245180,15245258-15245851 30 1.4
08_02_0581 + 18986084-18986176,18986284-18986668,18986779-189868... 29 1.8
05_03_0458 + 14280953-14281866,14281964-14282912 29 1.8
02_04_0001 - 18816492-18816741,18816881-18817050,18817244-188173... 29 1.8
01_01_0892 + 7037384-7037795,7038447-7038962,7039507-7039593,703... 29 1.8
10_01_0026 - 351737-353443 29 2.4
04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066 29 2.4
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 29 2.4
02_02_0140 + 7125914-7126264,7126426-7126677,7126766-7126861,712... 29 2.4
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892... 29 2.4
06_01_0896 - 6889754-6890236 29 3.2
01_06_1818 - 40093327-40093384,40093501-40093580,40093661-400939... 29 3.2
09_02_0095 - 4199140-4199145,4199310-4199393,4199843-4199940,420... 28 4.2
07_03_0832 - 21823518-21823826,21823920-21824070,21824148-218243... 28 4.2
12_02_0454 + 19199063-19200757,19202201-19202287 28 5.6
10_07_0014 + 11800251-11800643,11800721-11801288,11801694-118017... 28 5.6
02_04_0522 - 23654012-23654611,23654761-23655081 28 5.6
06_03_0686 - 23514972-23515620,23515853-23515935 27 7.4
03_06_0416 - 33780911-33781861 27 7.4
02_02_0544 + 11367660-11368061,11368139-11368478,11369444-113695... 27 7.4
02_02_0201 - 7732371-7732667,7732745-7732822,7733001-7733066 27 7.4
02_01_0302 - 2021221-2023305 27 7.4
12_01_0102 - 788403-788937,789051-789164,789323-789687 27 9.8
07_01_0091 - 692416-693906 27 9.8
01_06_1164 - 35026345-35026954,35027853-35027939,35028120-350284... 27 9.8
>06_03_0178 + 17594062-17595576
Length = 504
Score = 57.2 bits (132), Expect = 8e-09
Identities = 28/49 (57%), Positives = 33/49 (67%)
Frame = +3
Query: 369 YSLVATPSPRPGDDGDCSPLMTWGEIEGTPFRLDGGDTPLPAVGAGTAY 515
YS V TPSP PG D SP MTWGEI+GTP RLD +TP + G+ A+
Sbjct: 346 YSFVRTPSPAPGVDE--SPFMTWGEIDGTPLRLDPEETPGGSGGSDRAH 392
>03_05_0781 +
27654764-27655429,27655902-27656004,27656535-27656590,
27656895-27657059,27657078-27657083,27657657-27657770,
27658170-27658262
Length = 400
Score = 31.9 bits (69), Expect = 0.34
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = -2
Query: 544 RSRTPPSSILYAVPAPTAGSGVSPPSSLKGVPSISPQV 431
RS +PPSS Y PAP G +P S S+ P V
Sbjct: 138 RSSSPPSSYGYTAPAPRGGYSAAPFYSPSPFVSVGPAV 175
>03_05_0173 + 21502765-21504216
Length = 483
Score = 31.5 bits (68), Expect = 0.45
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = -2
Query: 505 PAPTAGSGVSPPSSLKGV-PSISPQVINGEQSPSSPGR 395
P AGS SPP GV PS +PQ++ P S R
Sbjct: 55 PPVVAGSSSSPPQQRVGVFPSPTPQIVGSSPPPPSQAR 92
>06_03_1146 - 28004896-28005554,28005664-28005844
Length = 279
Score = 31.1 bits (67), Expect = 0.60
Identities = 20/60 (33%), Positives = 25/60 (41%)
Frame = -2
Query: 541 SRTPPSSILYAVPAPTAGSGVSPPSSLKGVPSISPQVINGEQSPSSPGRGDGVATSEYWP 362
S +P S + PAPT + SPP+ PS S Q P PG AT+ P
Sbjct: 186 SPSPSVSPMAPAPAPTTSTPSSPPAPAAMAPSPSTTPGGVAQPPPPPGTDGANATTPAAP 245
>03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,
6627009-6627116,6627194-6627328,6627429-6627528,
6627763-6627974,6628060-6628125,6628231-6628464,
6628583-6628641,6628716-6628782,6628863-6629192,
6629267-6629335,6629417-6629503,6629605-6629692,
6630057-6630178,6630251-6630355,6630442-6630485,
6630558-6630627,6630711-6630814,6630980-6631189,
6632935-6633018,6633291-6634003,6634115-6634649,
6634703-6634789,6634826-6634970,6635049-6635125,
6635215-6635359,6635462-6635626,6635725-6635958
Length = 1761
Score = 31.1 bits (67), Expect = 0.60
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = -2
Query: 535 TPPSSILYAVPAPTAGSGVSPPSSLKGVPSISPQVINGEQSPSSPGRGDGVATS 374
+PPS A PA T G G SPP S P +P+ + + +P G G + S
Sbjct: 1179 SPPSPSQSAPPANTGGGG-SPPPSHGSPP--APKAVQSQPAPKRSGDGGSSSDS 1229
Score = 27.1 bits (57), Expect = 9.8
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = -2
Query: 535 TPPSSILYAVPAPTAGSGVSPPSSLKGVPSISPQVINGEQSPSSPGRG 392
+PP S A P ++GS SPPS + P P G SP P G
Sbjct: 1160 SPPPSTPSAPPTNSSGSAPSPPSPSQSAP---PANTGGGGSP-PPSHG 1203
>07_03_0689 + 20711313-20711906,20713224-20713860,20713946-20714049
Length = 444
Score = 30.3 bits (65), Expect = 1.0
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Frame = -2
Query: 535 TPPSSILYAVPAPTAGSGVSPPSSLKGVPSISPQV-INGEQSPSSPGRGDGVATSEYWP- 362
+PP S+L G ++PPS G P+ P + E + G G G AT+ P
Sbjct: 21 SPPPSLLLPPSPRLQGRRLTPPSCTPGTPAALPSPGPDKEPEREAAGSGSGSATTPRSPA 80
Query: 361 -LGFSEV 344
LG S++
Sbjct: 81 QLGSSQL 87
>08_01_0781 + 7570485-7570796,7570808-7570885,7570963-7571562
Length = 329
Score = 29.9 bits (64), Expect = 1.4
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 450 LRSRPRSSTVNSHRRPRGAATVSPPASTG 364
LR+ P+ T+ SH+RPR + +P S G
Sbjct: 157 LRNSPKFQTLESHKRPRSRKSSTPIKSAG 185
>02_03_0103 + 15244812-15245180,15245258-15245851
Length = 320
Score = 29.9 bits (64), Expect = 1.4
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 450 LRSRPRSSTVNSHRRPRGAATVSPPASTG 364
LR+ P+ T+ SH+RPR + +P S G
Sbjct: 150 LRNSPKFQTLKSHKRPRSRKSSTPIESAG 178
>08_02_0581 +
18986084-18986176,18986284-18986668,18986779-18986861,
18986966-18987110,18987823-18987951,18988047-18988171,
18988261-18988419,18988503-18988665,18988750-18988875,
18989110-18989471,18989572-18989772,18989873-18989982,
18990079-18990163,18990298-18990426,18990505-18990610,
18990688-18990776,18990885-18991184
Length = 929
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -2
Query: 301 SCVLAMALMTCLFLLWSKGATVRRVFRCTSSDLGVAC*DAAPDGT 167
+C+ + C+ L+ +G + + G AC DAAPDGT
Sbjct: 39 ACITVFPVFLCVILVVLQGVINHEINK-PKYQCGCACVDAAPDGT 82
>05_03_0458 + 14280953-14281866,14281964-14282912
Length = 620
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -2
Query: 535 TPPSSILYAVPAPTAGSGVSPPSSLKGVPSISPQVINGEQSPSSP 401
+PPSS A P+P + + S+ VP + SPSSP
Sbjct: 21 SPPSSCRNAAPSPPSSNSTPTSSTTPTVPPSLTTTSSPSSSPSSP 65
>02_04_0001 -
18816492-18816741,18816881-18817050,18817244-18817388,
18817495-18817565,18817910-18817993,18818103-18818222,
18818310-18818480,18818955-18819044,18821893-18821985,
18822073-18822405
Length = 508
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -2
Query: 511 AVPAPTAGSG-VSPPSSLKGVPSISPQVINGEQSPSSPGRG 392
++PAP G+G VSPPS P S Q E++ PG G
Sbjct: 34 SIPAPPEGAGDVSPPSPPPPPPPSSVQSRAHERAREQPGDG 74
>01_01_0892 +
7037384-7037795,7038447-7038962,7039507-7039593,
7039698-7039768,7040148-7040224,7040380-7040527,
7040973-7041134,7041374-7041694
Length = 597
Score = 29.5 bits (63), Expect = 1.8
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = -2
Query: 544 RSRTPPSSILYAVPAPTAGSGVSPPS-SLKGVPSISPQVINGEQS--PSSPGRGDGVATS 374
++ TPP + A P P + + SPP+ PS++P S PSSP ++S
Sbjct: 12 QTATPPPANQTAAPPPASNNSSSPPAPGSLSPPSLTPPAAPSPPSTTPSSPAAAAAASSS 71
>10_01_0026 - 351737-353443
Length = 568
Score = 29.1 bits (62), Expect = 2.4
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -2
Query: 541 SRTPPSSILYAVPAPTAGSGVSPPSSLKGVPSISPQVINGEQS-PSSPGRGDGVAT 377
S PSS L P+P + S PP+S P + V + Q+ PSS + T
Sbjct: 18 SAPSPSSSLSKSPSPPSPSSPPPPASTNAPPKSAGGVSSSTQAQPSSESSSESTTT 73
>04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066
Length = 646
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -2
Query: 532 PPSSILYAVPAPTAGSGVSPPSSLKGVPSISPQVINGEQSPSSPG 398
PP S +Y P P G PP ++ P +P G +PS+ G
Sbjct: 449 PPGSSMYNPPPPAPGQATPPPYGVQYAPPPAPIPPPG-TAPSTDG 492
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 29.1 bits (62), Expect = 2.4
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Frame = -2
Query: 532 PPSSILYAV--PAPTAGSGV----SPPSSLKGVPSISP-QVINGEQSPSSPGRGDGV 383
PP+ Y V P P+ G+G PP + GVP P + G Q+P +P +G+
Sbjct: 1089 PPTLGDYGVAPPPPSIGAGAPPPPPPPGGITGVPPPPPIGGLGGHQAPPAPPLPEGI 1145
>02_02_0140 +
7125914-7126264,7126426-7126677,7126766-7126861,
7127013-7127187,7127283-7127363,7127451-7127548,
7127828-7127920,7128607-7128678,7128998-7129117,
7129210-7129260,7130026-7130211,7130355-7130411
Length = 543
Score = 29.1 bits (62), Expect = 2.4
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = -2
Query: 532 PPSSILYAVPAPTAGSGVSPPSSL---KGVPSISPQVINGEQSPSSPGR 395
PPSS L P+ SPPS L +GVP S + + S+PGR
Sbjct: 27 PPSSSLLPPLLPSPPRPPSPPSPLPGGRGVPHSSLAAASRHYASSTPGR 75
>01_06_0565 +
30287253-30287502,30287522-30289010,30289133-30289277,
30289679-30289729
Length = 644
Score = 29.1 bits (62), Expect = 2.4
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = -2
Query: 541 SRTPPSSILYAVPAPTAGSGVSPPSSLKGVPSISPQVINGEQSPSSPGRGDG 386
S TPPS P G G P+ PS +P + + SP++PG G G
Sbjct: 180 SDTPPSPSSDTSPTTPGGGGGYTPT-----PSDAPPSPSSDTSPTTPGGGGG 226
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = -2
Query: 514 YAVPAPTAGSGVSPPSSLKG---VPSISPQVINGEQSPSSPGRG 392
Y P+P+ G+ + P G PS +P + + SPS+PG G
Sbjct: 103 YNPPSPSIGTSPTTPGGGGGYTPTPSDTPPSPSSDTSPSTPGGG 146
Score = 27.1 bits (57), Expect = 9.8
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = -2
Query: 541 SRTPPSSILYAVPAPTAGSGVSPPSSLKGVPSISPQVINGEQSPSSPGRGDG 386
S TPPS P+ G S P+ PS S + SP++PG G G
Sbjct: 128 SDTPPSPSSDTSPSTPGGGCSSSPTPCDAPPSPS-----SDTSPTTPGGGGG 174
Score = 27.1 bits (57), Expect = 9.8
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = -2
Query: 532 PPSSILYAVPA-PTAGSGVSPPSSLKGVPSISPQVINGEQSPSSPGRGDG 386
PPS P P G G SP PS +P + + SP++PG G G
Sbjct: 157 PPSPSSDTSPTTPGGGGGYSP------TPSDTPPSPSSDTSPTTPGGGGG 200
Score = 27.1 bits (57), Expect = 9.8
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = -2
Query: 541 SRTPPSSILYAVPAPTAGSGVSPPSSLKGVPSISPQVINGEQSPSSPGRGDG 386
S PPS P G G P+ PS +P + + SP++PG G G
Sbjct: 206 SDAPPSPSSDTSPTTPGGGGGYTPT-----PSDAPPSPSSDTSPTTPGGGGG 252
>06_01_0896 - 6889754-6890236
Length = 160
Score = 28.7 bits (61), Expect = 3.2
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 381 ATPSPRPGDDGDCSPLMTWGEIEGTPFRLDGG 476
A P PR G++G L W +EG DGG
Sbjct: 84 APPLPRSGEEGHRCCLWRWRRVEGQLRATDGG 115
>01_06_1818 -
40093327-40093384,40093501-40093580,40093661-40093946,
40095007-40095291,40095386-40095513,40095625-40096560,
40096650-40096712,40096801-40096854,40096963-40097139,
40097452-40097583,40097666-40097785,40097935-40098627,
40098760-40099158,40099263-40099271
Length = 1139
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +3
Query: 177 GAASQQATPKSELVHRN-TRLTVAPFDHNKNKQVISAIARTQDA 305
G +QQ TP + RN + LTV+ D NK K++ + R+ A
Sbjct: 44 GELAQQDTPMKKKFQRNFSELTVSWSDENKEKKLYIVLIRSYTA 87
>09_02_0095 -
4199140-4199145,4199310-4199393,4199843-4199940,
4201588-4201741
Length = 113
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +3
Query: 438 GEIEGTPFRLDGGDTPLPAVGAGTAYRMLEGG 533
GE E T +R GG+ + +VGA A+ EGG
Sbjct: 21 GEEENTQWRKKGGEEHVSSVGARAAHVEREGG 52
>07_03_0832 -
21823518-21823826,21823920-21824070,21824148-21824385,
21824469-21824679,21824789-21825009,21825590-21825697,
21825813-21826142,21826740-21827050,21828969-21829651
Length = 853
Score = 28.3 bits (60), Expect = 4.2
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 301 SCVLAMALMTCLFLLWSKGATVRRV 227
S V+ L+ CLFL W +G ++ V
Sbjct: 455 SAVVLFVLLACLFLWWKRGRNIKDV 479
>12_02_0454 + 19199063-19200757,19202201-19202287
Length = 593
Score = 27.9 bits (59), Expect = 5.6
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -2
Query: 493 AGSGVSPPSSLKGVPSISPQVINGEQSPSS-PGRGDGVATSEYWPL 359
A S +S P S Q++ + PSS PGRG GVA++ P+
Sbjct: 61 AHSVLSDPHERSYYDSHRSQILFSDHHPSSGPGRGGGVASASASPV 106
>10_07_0014 +
11800251-11800643,11800721-11801288,11801694-11801729,
11802908-11802911,11804142-11805108
Length = 655
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 450 LRSRPRSSTVNSHRRPRGAATVSPPASTG 364
LR+ P+ T+ SH+RPR + +P G
Sbjct: 158 LRNSPKFQTLESHKRPRSRKSSTPIERAG 186
>02_04_0522 - 23654012-23654611,23654761-23655081
Length = 306
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 450 LRSRPRSSTVNSHRRPRGAATVSPPASTG 364
LR+ P+ T+ SH+RPR + +P G
Sbjct: 134 LRNSPKFQTLESHKRPRSRKSSTPIERAG 162
>06_03_0686 - 23514972-23515620,23515853-23515935
Length = 243
Score = 27.5 bits (58), Expect = 7.4
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Frame = -2
Query: 535 TPPSSILYAVPAPTAGSGVSPPSSLKGVPSISPQVIN---GEQSPSSPGRG 392
TP S + T GS PP ++ I+ Q+I G P SP G
Sbjct: 182 TPSDSTVTTTSTSTTGSPSPPPPAMDDEERIALQMIEELLGRSGPGSPSHG 232
>03_06_0416 - 33780911-33781861
Length = 316
Score = 27.5 bits (58), Expect = 7.4
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = -2
Query: 541 SRTPPSSILYAVPAPTAGSGVSPPSSLKGVP--SISPQVINGEQSPSSPGRG 392
SRT PSS L P + + PS L P +PQ SP +PGRG
Sbjct: 2 SRTTPSSPLSRATPPRSPTAGGTPSRLAVAPPSPTTPQCAI-PASPHTPGRG 52
>02_02_0544 +
11367660-11368061,11368139-11368478,11369444-11369571,
11371249-11371404
Length = 341
Score = 27.5 bits (58), Expect = 7.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 450 LRSRPRSSTVNSHRRPRGAATVSP 379
LR+ P+ T+ SH+RPR + +P
Sbjct: 161 LRNSPKFQTLESHKRPRSRKSSTP 184
>02_02_0201 - 7732371-7732667,7732745-7732822,7733001-7733066
Length = 146
Score = 27.5 bits (58), Expect = 7.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 450 LRSRPRSSTVNSHRRPRGAATVSP 379
LR+ P+ T+ SH+RPR + +P
Sbjct: 75 LRNSPKFQTLESHKRPRSRKSSTP 98
>02_01_0302 - 2021221-2023305
Length = 694
Score = 27.5 bits (58), Expect = 7.4
Identities = 19/56 (33%), Positives = 23/56 (41%)
Frame = -2
Query: 529 PSSILYAVPAPTAGSGVSPPSSLKGVPSISPQVINGEQSPSSPGRGDGVATSEYWP 362
PSS A P S SPPSS S SP + +PS P G ++ P
Sbjct: 429 PSSSYPAPPGSNTPSYPSPPSSATTPSSHSPPGGSSSTTPSYPSPNGGKPSTPSHP 484
>12_01_0102 - 788403-788937,789051-789164,789323-789687
Length = 337
Score = 27.1 bits (57), Expect = 9.8
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 336 VSLTSEKPSGQYSLVATPSPRPGDDGD 416
++ T+ P+ +SL A P+ P DD D
Sbjct: 206 INNTNNNPAALHSLTANPNGHPDDDSD 232
>07_01_0091 - 692416-693906
Length = 496
Score = 27.1 bits (57), Expect = 9.8
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -3
Query: 183 PPPTARTLCDYERCIATYLAH 121
PPP LC RC+ +LAH
Sbjct: 84 PPPATLQLCVGHRCLVFHLAH 104
>01_06_1164 - 35026345-35026954,35027853-35027939,35028120-35028493,
35037372-35038586,35038659-35039316,35039331-35041012
Length = 1541
Score = 27.1 bits (57), Expect = 9.8
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -2
Query: 502 APTAGSGVSPPSSLKGVPSISPQVINGEQSPSSPGRGDGVATS 374
AP G PP++ G P P+ + + +S G G G++ S
Sbjct: 1163 APEPNGGPRPPTAGAGPPPACPKAQSRLAAAASGGSGSGISGS 1205
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,999,573
Number of Sequences: 37544
Number of extensions: 319598
Number of successful extensions: 1557
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 1437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1544
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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