Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_M19
(545 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L78010-1|AAL40039.1| 476|Homo sapiens ES2 protein. 116 5e-26
CR456344-1|CAG30230.1| 476|Homo sapiens Em:AC004471.1 protein. 116 5e-26
BC006542-1|AAH06542.1| 476|Homo sapiens DiGeorge syndrome criti... 116 5e-26
BC003015-1|AAH03015.1| 475|Homo sapiens Similar to expressed se... 116 5e-26
AY923834-1|AAY17361.1| 2108|Homo sapiens kinesin family member 2... 32 1.5
DQ009660-1|AAY26234.1| 1836|Homo sapiens expressed in synovial l... 31 2.6
BC146783-1|AAI46784.1| 1773|Homo sapiens FNDC1 protein protein. 31 2.6
AY386362-1|AAR25619.1| 1780|Homo sapiens breast cancer-associate... 31 2.6
AB058769-1|BAB47495.2| 1783|Homo sapiens KIAA1866 protein protein. 31 2.6
X94438-1|CAA64212.2| 427|Homo sapiens transcription factor prot... 31 3.5
BC015497-1|AAH15497.2| 434|Homo sapiens TEA domain family membe... 31 3.5
AY101179-1|AAM89497.1| 384|Homo sapiens related transcription e... 31 3.5
AK222947-1|BAD96667.1| 434|Homo sapiens TEA domain family membe... 31 3.5
M65158-1|AAA96439.1| 625|Homo sapiens type VII collagen protein. 30 4.6
L23982-1|AAA58965.1| 2912|Homo sapiens collagen type VII protein. 30 4.6
L02870-1|AAA75438.1| 2944|Homo sapiens alpha-1 type VII collagen... 30 4.6
BC094822-1|AAH94822.1| 330|Homo sapiens THAP4 protein protein. 30 4.6
BC071896-1|AAH71896.1| 330|Homo sapiens THAP4 protein protein. 30 4.6
BC069235-1|AAH69235.1| 577|Homo sapiens THAP domain containing ... 30 4.6
BC024324-1|AAH24324.1| 440|Homo sapiens TNRC6A protein protein. 30 4.6
AY035864-1|AAK62026.1| 1709|Homo sapiens GW182 autoantigen protein. 30 4.6
AJ492221-1|CAD37348.1| 1962|Homo sapiens EDIE protein protein. 30 4.6
AF258556-1|AAG23759.1| 577|Homo sapiens PP238 protein. 30 4.6
AC133528-4|AAY14918.1| 577|Homo sapiens unknown protein. 30 4.6
AB040893-1|BAA95984.1| 1400|Homo sapiens KIAA1460 protein protein. 30 4.6
DQ139275-1|ABA43896.1| 1313|Homo sapiens Tax1-binding protein 2 ... 30 6.1
BX284668-3|CAH70057.1| 1898|Homo sapiens ciliary rootlet coiled-... 30 6.1
BX284668-2|CAH70055.1| 2017|Homo sapiens ciliary rootlet coiled-... 30 6.1
AL049569-4|CAI20365.1| 1898|Homo sapiens ciliary rootlet coiled-... 30 6.1
AL049569-3|CAI20363.1| 2017|Homo sapiens ciliary rootlet coiled-... 30 6.1
AK098727-1|BAC05392.1| 299|Homo sapiens protein ( Homo sapiens ... 30 6.1
AB007914-1|BAA32290.2| 1919|Homo sapiens KIAA0445 protein protein. 30 6.1
AF461089-1|AAQ04776.1| 566|Homo sapiens chondroitin sulfate pro... 29 8.0
AF461087-1|AAQ04774.1| 539|Homo sapiens chondroitin sulfate pro... 29 8.0
AF059274-1|AAC69612.1| 539|Homo sapiens neuroglycan C protein. 29 8.0
>L78010-1|AAL40039.1| 476|Homo sapiens ES2 protein.
Length = 476
Score = 116 bits (279), Expect = 5e-26
Identities = 67/185 (36%), Positives = 97/185 (52%), Gaps = 4/185 (2%)
Frame = +3
Query: 3 RGATKLASQFEAEKTXXXXXXXXXXXPSIEQQADQSKRPHELDTWRYTARNHIMYVPSGA 182
R + A ++AE+ PS E QA +S + ++TW+Y A+N +MY P G
Sbjct: 173 RSRARHAWLYQAEEEFEKRQKDNLELPSAEHQAIESSQA-SVETWKYKAKNSLMYYPEGV 231
Query: 183 ASQQATPKS--ELVHRNTRLTVAPFDHNKNKQVISAIARTQDASVNGKIGVDGVSLT-SE 353
++ K ++VH+NTR PF ++ + A GK+G DG L E
Sbjct: 232 PDEEQLFKKPRQVVHKNTRFLRDPFSQALSRCQLQQAAALNAQHKQGKVGPDGKELIPQE 291
Query: 354 KPS-GQYSLVATPSPRPGDDGDCSPLMTWGEIEGTPFRLDGGDTPLPAVGAGTAYRMLEG 530
P G + VATPSP PG + SP+MTWGE+E TP R++G +TP G A+++LE
Sbjct: 292 SPRVGGFGFVATPSPAPGVNE--SPMMTWGEVENTPLRVEGSETPYVDRTPGPAFKILEP 349
Query: 531 GVRER 545
G RER
Sbjct: 350 GRRER 354
>CR456344-1|CAG30230.1| 476|Homo sapiens Em:AC004471.1 protein.
Length = 476
Score = 116 bits (279), Expect = 5e-26
Identities = 67/185 (36%), Positives = 97/185 (52%), Gaps = 4/185 (2%)
Frame = +3
Query: 3 RGATKLASQFEAEKTXXXXXXXXXXXPSIEQQADQSKRPHELDTWRYTARNHIMYVPSGA 182
R + A ++AE+ PS E QA +S + ++TW+Y A+N +MY P G
Sbjct: 173 RSRARHAWLYQAEEEFEKRQKDNLELPSAEHQAIESSQA-SVETWKYKAKNSLMYYPEGV 231
Query: 183 ASQQATPKS--ELVHRNTRLTVAPFDHNKNKQVISAIARTQDASVNGKIGVDGVSLT-SE 353
++ K ++VH+NTR PF ++ + A GK+G DG L E
Sbjct: 232 PDEEQLFKKPRQVVHKNTRFLRDPFSQALSRCQLQQAAALNAQHKQGKVGPDGKELIPQE 291
Query: 354 KPS-GQYSLVATPSPRPGDDGDCSPLMTWGEIEGTPFRLDGGDTPLPAVGAGTAYRMLEG 530
P G + VATPSP PG + SP+MTWGE+E TP R++G +TP G A+++LE
Sbjct: 292 SPRVGGFGFVATPSPAPGVNE--SPMMTWGEVENTPLRVEGSETPYVDRTPGPAFKILEP 349
Query: 531 GVRER 545
G RER
Sbjct: 350 GRRER 354
>BC006542-1|AAH06542.1| 476|Homo sapiens DiGeorge syndrome critical
region gene 14 protein.
Length = 476
Score = 116 bits (279), Expect = 5e-26
Identities = 67/185 (36%), Positives = 97/185 (52%), Gaps = 4/185 (2%)
Frame = +3
Query: 3 RGATKLASQFEAEKTXXXXXXXXXXXPSIEQQADQSKRPHELDTWRYTARNHIMYVPSGA 182
R + A ++AE+ PS E QA +S + ++TW+Y A+N +MY P G
Sbjct: 173 RSRARHAWLYQAEEEFEKRQKDNLELPSAEHQAIESSQA-SVETWKYKAKNSLMYYPEGV 231
Query: 183 ASQQATPKS--ELVHRNTRLTVAPFDHNKNKQVISAIARTQDASVNGKIGVDGVSLT-SE 353
++ K ++VH+NTR PF ++ + A GK+G DG L E
Sbjct: 232 PDEEQLFKKPRQVVHKNTRFLRDPFSQALSRCQLQQAAALNAQHKQGKVGPDGKELIPQE 291
Query: 354 KPS-GQYSLVATPSPRPGDDGDCSPLMTWGEIEGTPFRLDGGDTPLPAVGAGTAYRMLEG 530
P G + VATPSP PG + SP+MTWGE+E TP R++G +TP G A+++LE
Sbjct: 292 SPRVGGFGFVATPSPAPGVNE--SPMMTWGEVENTPLRVEGSETPYVDRTPGPAFKILEP 349
Query: 531 GVRER 545
G RER
Sbjct: 350 GRRER 354
>BC003015-1|AAH03015.1| 475|Homo sapiens Similar to expressed
sequence 2 embryonic lethal protein.
Length = 475
Score = 116 bits (279), Expect = 5e-26
Identities = 67/185 (36%), Positives = 97/185 (52%), Gaps = 4/185 (2%)
Frame = +3
Query: 3 RGATKLASQFEAEKTXXXXXXXXXXXPSIEQQADQSKRPHELDTWRYTARNHIMYVPSGA 182
R + A ++AE+ PS E QA +S + ++TW+Y A+N +MY P G
Sbjct: 172 RSRARHAWLYQAEEEFEKRQKDNLELPSAEHQAIESSQA-SVETWKYKAKNSLMYYPEGV 230
Query: 183 ASQQATPKS--ELVHRNTRLTVAPFDHNKNKQVISAIARTQDASVNGKIGVDGVSLT-SE 353
++ K ++VH+NTR PF ++ + A GK+G DG L E
Sbjct: 231 PDEEQLFKKPRQVVHKNTRFLRDPFSQALSRCQLQQAAALNAQHKQGKVGPDGKELIPQE 290
Query: 354 KPS-GQYSLVATPSPRPGDDGDCSPLMTWGEIEGTPFRLDGGDTPLPAVGAGTAYRMLEG 530
P G + VATPSP PG + SP+MTWGE+E TP R++G +TP G A+++LE
Sbjct: 291 SPRVGGFGFVATPSPAPGVNE--SPMMTWGEVENTPLRVEGSETPYVDRTPGPAFKILEP 348
Query: 531 GVRER 545
G RER
Sbjct: 349 GRRER 353
>AY923834-1|AAY17361.1| 2108|Homo sapiens kinesin family member 26B
protein.
Length = 2108
Score = 31.9 bits (69), Expect = 1.5
Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = -2
Query: 523 SILYAVPAPTAGSGVSPPSSLKGVPS-ISPQVINGEQSPSSPGRGDGVAT 377
S L + P+ GSG S PSS G P SP + G SP S G G T
Sbjct: 61 SALGSSGTPSPGSGTSSPSSFTGSPGPASPGI--GTSSPGSLGGSPGFGT 108
>DQ009660-1|AAY26234.1| 1836|Homo sapiens expressed in synovial lining
protein protein.
Length = 1836
Score = 31.1 bits (67), Expect = 2.6
Identities = 16/26 (61%), Positives = 17/26 (65%)
Frame = -3
Query: 444 SRPRSSTVNSHRRPRGAATVSPPAST 367
S PR+S V S PR AATVSP A T
Sbjct: 1198 SSPRASHVPSRLPPRSAATVSPVAGT 1223
>BC146783-1|AAI46784.1| 1773|Homo sapiens FNDC1 protein protein.
Length = 1773
Score = 31.1 bits (67), Expect = 2.6
Identities = 16/26 (61%), Positives = 17/26 (65%)
Frame = -3
Query: 444 SRPRSSTVNSHRRPRGAATVSPPAST 367
S PR+S V S PR AATVSP A T
Sbjct: 1135 SSPRASHVPSRPPPRSAATVSPVAGT 1160
>AY386362-1|AAR25619.1| 1780|Homo sapiens breast cancer-associated
antigen SGA-72M protein.
Length = 1780
Score = 31.1 bits (67), Expect = 2.6
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -2
Query: 499 PTAGSGVSPPSSLKGVPSISPQVINGEQSPSSPGRGDGVATS 374
P G G+ P G PS + ++ Q SPG+G+G + S
Sbjct: 181 PKEGPGILQPFESYGTPSQGSKNMDYSQDSKSPGKGNGASPS 222
>AB058769-1|BAB47495.2| 1783|Homo sapiens KIAA1866 protein protein.
Length = 1783
Score = 31.1 bits (67), Expect = 2.6
Identities = 16/26 (61%), Positives = 17/26 (65%)
Frame = -3
Query: 444 SRPRSSTVNSHRRPRGAATVSPPAST 367
S PR+S V S PR AATVSP A T
Sbjct: 1145 SSPRASHVPSRPPPRSAATVSPVAGT 1170
>X94438-1|CAA64212.2| 427|Homo sapiens transcription factor
protein.
Length = 427
Score = 30.7 bits (66), Expect = 3.5
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -2
Query: 481 VSPPSSLKGVPSISPQVINGEQSPSSPGRGDGVATSEYWPLGFS 350
V PP L G S + + P+ P +G VA+S+ W L FS
Sbjct: 180 VQPPLPLPGFESPAGPAPSPSAPPAPPWQGRSVASSKLWMLEFS 223
>BC015497-1|AAH15497.2| 434|Homo sapiens TEA domain family member 4
protein.
Length = 434
Score = 30.7 bits (66), Expect = 3.5
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -2
Query: 481 VSPPSSLKGVPSISPQVINGEQSPSSPGRGDGVATSEYWPLGFS 350
V PP L G S + + P+ P +G VA+S+ W L FS
Sbjct: 187 VQPPLPLPGFESPAGPAPSPSAPPAPPWQGRSVASSKLWMLEFS 230
>AY101179-1|AAM89497.1| 384|Homo sapiens related transcription
enhancer factor 1B protein.
Length = 384
Score = 30.7 bits (66), Expect = 3.5
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -2
Query: 481 VSPPSSLKGVPSISPQVINGEQSPSSPGRGDGVATSEYWPLGFS 350
V PP L G S + + P+ P +G VA+S+ W L FS
Sbjct: 137 VQPPLPLPGFESPAGPAPSPSAPPAPPWQGRSVASSKLWMLEFS 180
>AK222947-1|BAD96667.1| 434|Homo sapiens TEA domain family member 4
isoform 1 variant protein.
Length = 434
Score = 30.7 bits (66), Expect = 3.5
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -2
Query: 481 VSPPSSLKGVPSISPQVINGEQSPSSPGRGDGVATSEYWPLGFS 350
V PP L G S + + P+ P +G VA+S+ W L FS
Sbjct: 187 VQPPLPLPGFESPAGPAPSPSAPPAPPWQGRSVASSKLWMLEFS 230
>M65158-1|AAA96439.1| 625|Homo sapiens type VII collagen protein.
Length = 625
Score = 30.3 bits (65), Expect = 4.6
Identities = 18/41 (43%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = -2
Query: 508 VPAPTAGSGVSPPSSLKGVPSISPQVINGEQSPSSPGR-GD 389
+P P G P KG P QVI GE P PGR GD
Sbjct: 516 LPGPRGDPGERGPRGPKGEPGAPGQVIGGE-GPGLPGRKGD 555
>L23982-1|AAA58965.1| 2912|Homo sapiens collagen type VII protein.
Length = 2912
Score = 30.3 bits (65), Expect = 4.6
Identities = 18/41 (43%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = -2
Query: 508 VPAPTAGSGVSPPSSLKGVPSISPQVINGEQSPSSPGR-GD 389
+P P G P KG P QVI GE P PGR GD
Sbjct: 1330 LPGPRGDPGERGPRGPKGEPGAPGQVIGGE-GPGLPGRKGD 1369
>L02870-1|AAA75438.1| 2944|Homo sapiens alpha-1 type VII collagen
protein.
Length = 2944
Score = 30.3 bits (65), Expect = 4.6
Identities = 18/41 (43%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = -2
Query: 508 VPAPTAGSGVSPPSSLKGVPSISPQVINGEQSPSSPGR-GD 389
+P P G P KG P QVI GE P PGR GD
Sbjct: 1330 LPGPRGDPGERGPRGPKGEPGAPGQVIGGE-GPGLPGRKGD 1369
>BC094822-1|AAH94822.1| 330|Homo sapiens THAP4 protein protein.
Length = 330
Score = 30.3 bits (65), Expect = 4.6
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = -2
Query: 541 SRTPPSSILYAVPAPTAGSGVSPPSSLKGVPSISPQVINGEQSPSSP 401
+++PPSS L A P + S +PP+ + P + + + E S +SP
Sbjct: 34 AQSPPSSSLTATPQKPSQSPSAPPADV--TPKPATEAVQSEHSDASP 78
>BC071896-1|AAH71896.1| 330|Homo sapiens THAP4 protein protein.
Length = 330
Score = 30.3 bits (65), Expect = 4.6
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = -2
Query: 541 SRTPPSSILYAVPAPTAGSGVSPPSSLKGVPSISPQVINGEQSPSSP 401
+++PPSS L A P + S +PP+ + P + + + E S +SP
Sbjct: 34 AQSPPSSSLTATPQKPSQSPSAPPADV--TPKPATEAVQSEHSDASP 78
>BC069235-1|AAH69235.1| 577|Homo sapiens THAP domain containing 4
protein.
Length = 577
Score = 30.3 bits (65), Expect = 4.6
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = -2
Query: 541 SRTPPSSILYAVPAPTAGSGVSPPSSLKGVPSISPQVINGEQSPSSP 401
+++PPSS L A P + S +PP+ + P + + + E S +SP
Sbjct: 281 AQSPPSSSLTATPQKPSQSPSAPPADV--TPKPATEAVQSEHSDASP 325
>BC024324-1|AAH24324.1| 440|Homo sapiens TNRC6A protein protein.
Length = 440
Score = 30.3 bits (65), Expect = 4.6
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Frame = +3
Query: 279 SAIARTQDASVNGKIG-VDGVSLTSEK---PSGQYSLVATPSPRPGDDGDCSPLMTWGEI 446
S AR D+ + G V SL E P ++ A P PG G PL TW
Sbjct: 169 STSARNSDSKLTWSPGSVTNTSLAHELWKVPLPPKNITAPSRPPPGLTGQKPPLSTW--- 225
Query: 447 EGTPFRLDGG 476
+ +P R+ GG
Sbjct: 226 DNSPLRIGGG 235
>AY035864-1|AAK62026.1| 1709|Homo sapiens GW182 autoantigen protein.
Length = 1709
Score = 30.3 bits (65), Expect = 4.6
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Frame = +3
Query: 279 SAIARTQDASVNGKIG-VDGVSLTSEK---PSGQYSLVATPSPRPGDDGDCSPLMTWGEI 446
S AR D+ + G V SL E P ++ A P PG G PL TW
Sbjct: 1438 STSARNSDSKLTWSPGSVTNTSLAHELWKVPLPPKNITAPSRPPPGLTGQKPPLSTW--- 1494
Query: 447 EGTPFRLDGG 476
+ +P R+ GG
Sbjct: 1495 DNSPLRIGGG 1504
>AJ492221-1|CAD37348.1| 1962|Homo sapiens EDIE protein protein.
Length = 1962
Score = 30.3 bits (65), Expect = 4.6
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Frame = +3
Query: 279 SAIARTQDASVNGKIG-VDGVSLTSEK---PSGQYSLVATPSPRPGDDGDCSPLMTWGEI 446
S AR D+ + G V SL E P ++ A P PG G PL TW
Sbjct: 1691 STSARNSDSKLTWSPGSVTNTSLAHELWKVPLPPKNITAPSRPPPGLTGQKPPLSTW--- 1747
Query: 447 EGTPFRLDGG 476
+ +P R+ GG
Sbjct: 1748 DNSPLRIGGG 1757
>AF258556-1|AAG23759.1| 577|Homo sapiens PP238 protein.
Length = 577
Score = 30.3 bits (65), Expect = 4.6
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = -2
Query: 541 SRTPPSSILYAVPAPTAGSGVSPPSSLKGVPSISPQVINGEQSPSSP 401
+++PPSS L A P + S +PP+ + P + + + E S +SP
Sbjct: 281 AQSPPSSSLTATPQKPSQSPSAPPADV--TPKPATEAVQSEHSDASP 325
>AC133528-4|AAY14918.1| 577|Homo sapiens unknown protein.
Length = 577
Score = 30.3 bits (65), Expect = 4.6
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = -2
Query: 541 SRTPPSSILYAVPAPTAGSGVSPPSSLKGVPSISPQVINGEQSPSSP 401
+++PPSS L A P + S +PP+ + P + + + E S +SP
Sbjct: 281 AQSPPSSSLTATPQKPSQSPSAPPADV--TPKPATEAVQSEHSDASP 325
>AB040893-1|BAA95984.1| 1400|Homo sapiens KIAA1460 protein protein.
Length = 1400
Score = 30.3 bits (65), Expect = 4.6
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Frame = +3
Query: 279 SAIARTQDASVNGKIG-VDGVSLTSEK---PSGQYSLVATPSPRPGDDGDCSPLMTWGEI 446
S AR D+ + G V SL E P ++ A P PG G PL TW
Sbjct: 1129 STSARNSDSKLTWSPGSVTNTSLAHELWKVPLPPKNITAPSRPPPGLTGQKPPLSTW--- 1185
Query: 447 EGTPFRLDGG 476
+ +P R+ GG
Sbjct: 1186 DNSPLRIGGG 1195
>DQ139275-1|ABA43896.1| 1313|Homo sapiens Tax1-binding protein 2
protein.
Length = 1313
Score = 29.9 bits (64), Expect = 6.1
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -2
Query: 538 RTPPSSILYAVPAPTAGSGVSPPSSLKGVPSISPQVINGEQSPSSP 401
R P S PA +G G++ PS+L+ P P SP+SP
Sbjct: 758 RPVPGSPARDAPAEGSGEGLNSPSTLECSPGSQPPSPGPATSPASP 803
>BX284668-3|CAH70057.1| 1898|Homo sapiens ciliary rootlet coiled-coil,
rootletin protein.
Length = 1898
Score = 29.9 bits (64), Expect = 6.1
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -2
Query: 538 RTPPSSILYAVPAPTAGSGVSPPSSLKGVPSISPQVINGEQSPSSP 401
R P S PA +G G++ PS+L+ P P SP+SP
Sbjct: 1336 RPVPGSPARDAPAEGSGEGLNSPSTLECSPGSQPPSPGPATSPASP 1381
>BX284668-2|CAH70055.1| 2017|Homo sapiens ciliary rootlet coiled-coil,
rootletin protein.
Length = 2017
Score = 29.9 bits (64), Expect = 6.1
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -2
Query: 538 RTPPSSILYAVPAPTAGSGVSPPSSLKGVPSISPQVINGEQSPSSP 401
R P S PA +G G++ PS+L+ P P SP+SP
Sbjct: 1455 RPVPGSPARDAPAEGSGEGLNSPSTLECSPGSQPPSPGPATSPASP 1500
>AL049569-4|CAI20365.1| 1898|Homo sapiens ciliary rootlet coiled-coil,
rootletin protein.
Length = 1898
Score = 29.9 bits (64), Expect = 6.1
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -2
Query: 538 RTPPSSILYAVPAPTAGSGVSPPSSLKGVPSISPQVINGEQSPSSP 401
R P S PA +G G++ PS+L+ P P SP+SP
Sbjct: 1336 RPVPGSPARDAPAEGSGEGLNSPSTLECSPGSQPPSPGPATSPASP 1381
>AL049569-3|CAI20363.1| 2017|Homo sapiens ciliary rootlet coiled-coil,
rootletin protein.
Length = 2017
Score = 29.9 bits (64), Expect = 6.1
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -2
Query: 538 RTPPSSILYAVPAPTAGSGVSPPSSLKGVPSISPQVINGEQSPSSP 401
R P S PA +G G++ PS+L+ P P SP+SP
Sbjct: 1455 RPVPGSPARDAPAEGSGEGLNSPSTLECSPGSQPPSPGPATSPASP 1500
>AK098727-1|BAC05392.1| 299|Homo sapiens protein ( Homo sapiens
cDNA FLJ25861 fis, clone CBR01776. ).
Length = 299
Score = 29.9 bits (64), Expect = 6.1
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = -2
Query: 511 AVPAPTAGSGVSPPSSLKGVPSISPQVINGEQSPSSPGRGDGVATSE 371
AV AP A + + P G+PSI Q + + SP+ G G V E
Sbjct: 96 AVGAPAANTSL-PTMLATGIPSIPSQALGTQCSPAGKGEGPIVIPEE 141
>AB007914-1|BAA32290.2| 1919|Homo sapiens KIAA0445 protein protein.
Length = 1919
Score = 29.9 bits (64), Expect = 6.1
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -2
Query: 538 RTPPSSILYAVPAPTAGSGVSPPSSLKGVPSISPQVINGEQSPSSP 401
R P S PA +G G++ PS+L+ P P SP+SP
Sbjct: 1357 RPVPGSPARDAPAEGSGEGLNSPSTLECSPGSQPPSPGPATSPASP 1402
>AF461089-1|AAQ04776.1| 566|Homo sapiens chondroitin sulfate
proteoglycan 5-III protein.
Length = 566
Score = 29.5 bits (63), Expect = 8.0
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -2
Query: 511 AVPAPTAGSGVSPPSSLKGVPSISPQVINGEQSPSSPGRGDGVAT 377
AVPA AGS V +KG P+ P + + P G+ A+
Sbjct: 30 AVPAREAGSAVEAEELVKGSPAWEPPANDTREEAGPPAAGEDEAS 74
>AF461087-1|AAQ04774.1| 539|Homo sapiens chondroitin sulfate
proteoglycan 5-I protein.
Length = 539
Score = 29.5 bits (63), Expect = 8.0
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -2
Query: 511 AVPAPTAGSGVSPPSSLKGVPSISPQVINGEQSPSSPGRGDGVAT 377
AVPA AGS V +KG P+ P + + P G+ A+
Sbjct: 30 AVPAREAGSAVEAEELVKGSPAWEPPANDTREEAGPPAAGEDEAS 74
>AF059274-1|AAC69612.1| 539|Homo sapiens neuroglycan C protein.
Length = 539
Score = 29.5 bits (63), Expect = 8.0
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -2
Query: 511 AVPAPTAGSGVSPPSSLKGVPSISPQVINGEQSPSSPGRGDGVAT 377
AVPA AGS V +KG P+ P + + P G+ A+
Sbjct: 30 AVPAREAGSAVEAEELVKGSPAWEPPANDTREEAGPPAAGEDEAS 74
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,987,610
Number of Sequences: 237096
Number of extensions: 1693920
Number of successful extensions: 6796
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 5938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6743
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5364536570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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