Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_M19
         (545 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   2.7  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   2.7  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   2.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   8.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   8.2  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 371 VLATRFLRSQADPVHAYLTVNACIL 297
           +L+TR+ +    PV   LTVN  +L
Sbjct: 69  LLSTRYDKRLLPPVQGTLTVNVSVL 93


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 371 VLATRFLRSQADPVHAYLTVNACIL 297
           +L+TR+ +    PV   LTVN  +L
Sbjct: 69  LLSTRYDKRLLPPVQGTLTVNVSVL 93


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 371 VLATRFLRSQADPVHAYLTVNACIL 297
           +L+TR+ +    PV   LTVN  +L
Sbjct: 69  LLSTRYDKRLLPPVQGTLTVNVSVL 93


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 454 VPSISPQVINGEQSPSS 404
           +P I P  +N EQSP+S
Sbjct: 769 LPVIKPANVNKEQSPNS 785


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = -2

Query: 535 TPPSSILYAVPAPTAGSGVSPP--SSLKGVPSISPQVINGE 419
           TPP ++ Y V  PT       P  ++++ V +  P   NG+
Sbjct: 97  TPPEAVSYNVAVPTKSILEKKPDVTTVELVDATDPGEHNGD 137



 Score = 21.0 bits (42), Expect = 8.2
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -2

Query: 538 RTPPSSILYAVPAPTAGSGVSPPSSLKGVPS 446
           +T P+S +    +P  GSG S   S + + S
Sbjct: 581 KTSPNSAVRKCMSPINGSGASGSGSAENLSS 611


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -2

Query: 502 APTAGSGVSPPSSLKGVPSISPQVINGEQSPS 407
           +P A    SPP+  +G P   P      Q+PS
Sbjct: 30  SPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPS 61


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +3

Query: 306  SVNGKIGVDGVSLTSEKPSGQYSLVATPSPRPGDDGDCSPLMT 434
            S +G+ G   + LT  +P  +Y+LV     + G      PL+T
Sbjct: 1062 SGDGEEGGAELRLTGLRPYTKYTLVVQAYNQVGSGPLSEPLLT 1104


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +3

Query: 306  SVNGKIGVDGVSLTSEKPSGQYSLVATPSPRPGDDGDCSPLMT 434
            S +G+ G   + LT  +P  +Y+LV     + G      PL+T
Sbjct: 1058 SGDGEEGGAELRLTGLRPYTKYTLVVQAYNQVGSGPLSEPLLT 1100


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = +3

Query: 147 ARNHIMYVPSGAASQQATPKSELVHRNTRLTVAPFD 254
           A   I+Y P       A  +SELV    +    PFD
Sbjct: 745 ASMEILYKPGDHLGVFACNRSELVEAILKRVQTPFD 780


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,368
Number of Sequences: 438
Number of extensions: 2764
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)