Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_M18
         (492 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    26   2.7  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    25   6.2  
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22...    25   8.2  
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c...    25   8.2  
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    25   8.2  
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe...    25   8.2  

>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -2

Query: 281 YFDASYPNLKSVLSTLKILIELFFYSNEFNQIQSFFLQLY 162
           ++D     LK++ S +K+   +  Y   FN++++ FLQ Y
Sbjct: 330 FYDVHSLLLKNLSSKIKLCNHILMYQATFNEVKN-FLQTY 368


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -2

Query: 290 IFMYFDASYPNLKSVLSTLKILIELFFYSNEFNQIQSFF 174
           I  Y ++SYP+L  +   L   I         NQ+Q+F+
Sbjct: 594 IINYLESSYPSLLQIPGFLIQFITPIIKCTRGNQVQAFY 632


>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -2

Query: 251 SVLSTLKILIELFFYSNEFNQIQSFFLQLYVQFSVLT*FFEG 126
           S L+ LK L+EL+  +NE +  Q    +L     + T +FEG
Sbjct: 253 SYLAGLKNLVELWASNNELSSFQEIEDELSGLKKLETVYFEG 294


>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 581

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 8/29 (27%), Positives = 13/29 (44%)
 Frame = +1

Query: 325 FFFFVGRCNYWRLLTAFLGLIILSHAWVC 411
           F F +G   +W     ++GL  +   W C
Sbjct: 441 FMFGIGTARHWHWGPTYVGLGFIGFGWGC 469


>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 286 KIGRSGQKYRPLFFFFFVG 342
           K+   G+ Y PL FFF +G
Sbjct: 703 KMFSKGKPYYPLIFFFLIG 721


>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = +1

Query: 319 LFFFFFVGRCNYWRLLTAFLGLIILSHAWVC*YIITKNTGKYYLPDEPI 465
           L F  +V R  +W L   F GL  +     C  I+TK  G  YL D+ I
Sbjct: 194 LLFLLYV-RLPFWTLKHMFSGLFQVLGVQSCVVIVTK--GLMYLFDKHI 239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,914,422
Number of Sequences: 5004
Number of extensions: 38565
Number of successful extensions: 99
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)