Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_M18
(492 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0080 + 14393797-14393894,14395100-14395202,14395307-143954... 30 0.88
12_02_1173 + 26692030-26692379,26692478-26692565,26693309-266934... 28 3.5
12_02_1172 + 26680246-26680595,26680693-26680780,26681478-266816... 28 3.5
08_02_0251 - 14776308-14776495,14777624-14777708,14779125-147791... 28 4.7
06_03_1130 - 27826384-27827039,27827800-27828031,27828120-278284... 28 4.7
03_01_0205 + 1621760-1621784,1622079-1622208,1622569-1622635,162... 28 4.7
10_08_0989 + 22069244-22071679 27 6.2
>09_04_0080 +
14393797-14393894,14395100-14395202,14395307-14395427,
14396208-14396287,14396702-14396878,14396992-14397215,
14397881-14397887,14398807-14398888,14399188-14399384
Length = 362
Score = 30.3 bits (65), Expect = 0.88
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -1
Query: 342 AHKKKKEKWSILLTGPTYLYVFRRFVSESEVSFVHPQN 229
+H KK+E+ ILL Y++V RR +V + H Q+
Sbjct: 88 SHSKKREELQILLAKGIYIHVIRRRGDRIKVRYQHLQD 125
>12_02_1173 +
26692030-26692379,26692478-26692565,26693309-26693436,
26693514-26693705,26693810-26694012,26694127-26694290,
26694419-26694499,26694592-26694758,26694839-26694944,
26695097-26695347,26695388-26695508,26695594-26695722,
26695813-26696181
Length = 782
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -2
Query: 278 FDASYPNLKSVLSTLKILIELFF 210
F A+Y L+S LS L +LIE +F
Sbjct: 222 FSAAYTELESALSGLNVLIETYF 244
>12_02_1172 +
26680246-26680595,26680693-26680780,26681478-26681605,
26681683-26681874,26681979-26682181,26682296-26682459,
26682597-26682677,26682770-26682936,26683015-26683120,
26683269-26683519,26683610-26683682,26683751-26683879,
26683963-26684331
Length = 766
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -2
Query: 278 FDASYPNLKSVLSTLKILIELFF 210
F A+Y L+S LS L +LIE +F
Sbjct: 222 FSAAYTELESALSGLNVLIETYF 244
>08_02_0251 -
14776308-14776495,14777624-14777708,14779125-14779160,
14779930-14780177,14780670-14780901,14781159-14781937,
14781987-14782155
Length = 578
Score = 27.9 bits (59), Expect = 4.7
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -1
Query: 387 NKAQKRG*KPPIITPAHKKKKEKWSILLT-GPTYLYVFRRFVSESEV 250
NKA+ IT AH K +EK+++ ++ GP+ V + +ESE+
Sbjct: 146 NKAEALDEHVGAITSAHNKAQEKYNLFVSGGPSIDNVIVKVSNESEI 192
>06_03_1130 - 27826384-27827039,27827800-27828031,27828120-27828491,
27829243-27829449,27829611-27829704,27829806-27829870,
27829946-27830398,27830467-27830760,27830837-27831295,
27831367-27831588,27831755-27831968,27832039-27832494,
27833280-27833389,27833468-27833644,27833758-27833979,
27834048-27834167,27834274-27834383,27834552-27834607,
27835252-27835440,27835602-27835775,27836066-27836281,
27837066-27837106,27837971-27837986,27838330-27838415,
27838737-27838910,27839093-27839149,27839720-27840064,
27840175-27840216,27840377-27840496,27840575-27840724,
27840830-27841534,27841609-27841954,27842978-27843080,
27844817-27844860,27845905-27846101,27846322-27846344,
27846802-27847122,27847406-27847579,27847843-27848047,
27848817-27848880,27850097-27850278,27850291-27850350,
27850688-27850748,27851249-27851313,27851491-27851569,
27851656-27852021,27852442-27852790,27852887-27852989,
27853103-27853373,27854296-27854405,27854515-27854652
Length = 3364
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -2
Query: 290 IFMYFDASYPNLKSVLSTLKILIELFFYSNEF 195
+F D++Y N S S +K LI FFY EF
Sbjct: 2886 LFQSIDSAYKNSLSNTSDVKELIPEFFYMPEF 2917
>03_01_0205 +
1621760-1621784,1622079-1622208,1622569-1622635,
1622806-1622909,1623099-1623147,1623190-1623290,
1623623-1623740,1624342-1624455
Length = 235
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +3
Query: 318 TFLFFFCGPV*LLAAFNRVFGPYYSKPCLGLLIYYNKEYWKILFT 452
TF F +C L+ AF FG +G+ + YW +L +
Sbjct: 78 TFFFPYCTQCFLIGAFLNAFGAIVLGAPIGIKYWAATTYWSLLMS 122
>10_08_0989 + 22069244-22071679
Length = 811
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = -1
Query: 351 ITPAHKKKKEKWSILLT-GPTYLYVFRRFVSESEVSF 244
IT AH K +EK+++ ++ GP+ V + +ESE+ +
Sbjct: 173 ITSAHNKAQEKYNLFVSGGPSIDNVIVKVSNESEIHY 209
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,991,758
Number of Sequences: 37544
Number of extensions: 198915
Number of successful extensions: 320
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 320
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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