Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_M17
(567 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1276 - 35918954-35919106,35919220-35919325,35919477-359195... 35 0.052
01_05_0542 + 23086931-23087014,23087116-23087206,23087624-230876... 35 0.052
12_02_0244 - 16241243-16241279,16241781-16241848,16241930-162420... 32 0.28
11_03_0135 - 10547460-10547558,10547926-10548086,10548183-105483... 29 3.4
05_04_0294 - 19901254-19902154,19904185-19905007,19906335-19906425 28 4.5
04_01_0446 - 5815231-5816202 28 4.5
01_01_0616 + 4586086-4586835 28 4.5
02_02_0522 - 11161385-11161537,11162513-11162668,11164176-111642... 27 7.9
>01_06_1276 -
35918954-35919106,35919220-35919325,35919477-35919574,
35919693-35919757,35919877-35920033,35920177-35920268,
35920379-35920493,35920574-35920622,35920705-35920858,
35920993-35921019,35921530-35921707,35922326-35922685,
35922979-35922987,35923170-35923238
Length = 543
Score = 34.7 bits (76), Expect = 0.052
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +3
Query: 468 DDKDGHLVYWPGYVMGARYKIIDTLGEG 551
DDKDGH V+ G + RY+I+ +GEG
Sbjct: 188 DDKDGHYVFAVGENLTPRYRILSKMGEG 215
>01_05_0542 +
23086931-23087014,23087116-23087206,23087624-23087650,
23087742-23087895,23087958-23088023,23088249-23088292,
23088592-23088683,23088779-23088926,23089356-23089420,
23089495-23089592,23090368-23090392
Length = 297
Score = 34.7 bits (76), Expect = 0.052
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +3
Query: 468 DDKDGHLVYWPGYVMGARYKIIDTLGEG 551
DD+DGH V+ G + RYKI+ +GEG
Sbjct: 41 DDRDGHYVFDLGENLNRRYKILSKMGEG 68
>12_02_0244 -
16241243-16241279,16241781-16241848,16241930-16242032,
16242095-16242256,16242305-16242369,16242547-16242612,
16242738-16242829,16243029-16243134,16243231-16243279,
16243387-16243540,16243661-16243687,16243797-16243959,
16244621-16244701
Length = 390
Score = 32.3 bits (70), Expect = 0.28
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +3
Query: 465 KDDKDGHLVYWPGYVMGARYKIIDTLGEG 551
+DDKDGH V+ G + RY+I +GEG
Sbjct: 63 EDDKDGHFVFAVGDNLTPRYRINAKMGEG 91
>11_03_0135 -
10547460-10547558,10547926-10548086,10548183-10548306,
10548566-10548729,10549803-10549883,10549973-10550097,
10550200-10550430,10550566-10550588,10551055-10551539,
10551678-10552075,10552903-10552988,10553120-10553397,
10553494-10553714,10553927-10554018,10554148-10554213,
10555855-10556022
Length = 933
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +1
Query: 280 TENGAVAENVKARSIRGGGEMNVPNDHTTGD 372
+ENG AENV + G EMN N GD
Sbjct: 357 SENGVDAENVGSNMSNRGNEMNSVNKRKDGD 387
>05_04_0294 - 19901254-19902154,19904185-19905007,19906335-19906425
Length = 604
Score = 28.3 bits (60), Expect = 4.5
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Frame = +1
Query: 193 SIIHL--IQGQGPGPMRPSDVALMMVPQRFHTENGAVAENVKARSIRGGGE 339
S+ H+ + Q P MR S AL + G V R+ RGGGE
Sbjct: 486 SVAHMEFLYDQAPESMRSSAAALFWLSSSLGNYMGTVLVTAVQRATRGGGE 536
>04_01_0446 - 5815231-5816202
Length = 323
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/44 (27%), Positives = 19/44 (43%)
Frame = +1
Query: 409 TNHLRGHPQNRAPGHAPPSRTTRTDIWSTGLDMSWERDTKSSTR 540
+++L P + +P P R R WS G + W R + R
Sbjct: 238 SSNLMARPNSSSPSCRAPRRGRRAQRWSGGDGLGWSRSGSGAWR 281
>01_01_0616 + 4586086-4586835
Length = 249
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = -1
Query: 384 EM*VIAGGVIVWNVHFSASTNAPSFHVLCYGSVFCMKPLWYHHQ 253
E ++ G +W FS + F C+ + FC W+HH+
Sbjct: 15 EQWLVLGKQALWVEDFSGTCQRECFCASCFHA-FCTHCCWFHHE 57
>02_02_0522 -
11161385-11161537,11162513-11162668,11164176-11164298,
11164404-11164466,11164512-11164577,11165128-11165232,
11165336-11165435,11165520-11165590,11166037-11166093,
11167215-11167292,11167367-11167441,11168490-11168540,
11169015-11169094,11169560-11169660,11169749-11169810,
11170084-11170590
Length = 615
Score = 27.5 bits (58), Expect = 7.9
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 178 RVHVGSIIHLIQGQGPGPMRP 240
R+H G + QGQGPG RP
Sbjct: 20 RIHAGRAVAEEQGQGPGLRRP 40
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,522,278
Number of Sequences: 37544
Number of extensions: 253666
Number of successful extensions: 747
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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