Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_M17
(567 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70205-11|CAD44096.1| 409|Caenorhabditis elegans Hypothetical p... 39 0.002
Z70205-10|CAA94122.2| 887|Caenorhabditis elegans Hypothetical p... 39 0.002
Z68003-6|CAD44105.1| 409|Caenorhabditis elegans Hypothetical pr... 39 0.002
Z68003-5|CAA91979.2| 887|Caenorhabditis elegans Hypothetical pr... 39 0.002
Z81465-3|CAC42253.4| 800|Caenorhabditis elegans Hypothetical pr... 32 0.25
U41031-2|AAA82619.2| 615|Caenorhabditis elegans Hypothetical pr... 27 7.1
L15314-7|AAF99989.1| 346|Caenorhabditis elegans Hypothetical pr... 27 7.1
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in... 27 9.4
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in... 27 9.4
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in... 27 9.4
AL021473-2|CAA16304.1| 301|Caenorhabditis elegans Hypothetical ... 27 9.4
AC025724-8|AAG23381.1| 460|Caenorhabditis elegans Hypothetical ... 27 9.4
>Z70205-11|CAD44096.1| 409|Caenorhabditis elegans Hypothetical
protein E02H4.3b protein.
Length = 409
Score = 39.1 bits (87), Expect = 0.002
Identities = 17/29 (58%), Positives = 21/29 (72%)
Frame = +3
Query: 465 KDDKDGHLVYWPGYVMGARYKIIDTLGEG 551
+DDKDGHL+Y G + R+ I DTLGEG
Sbjct: 54 QDDKDGHLIYSKGDFILNRFTIYDTLGEG 82
>Z70205-10|CAA94122.2| 887|Caenorhabditis elegans Hypothetical
protein E02H4.3a protein.
Length = 887
Score = 39.1 bits (87), Expect = 0.002
Identities = 17/29 (58%), Positives = 21/29 (72%)
Frame = +3
Query: 465 KDDKDGHLVYWPGYVMGARYKIIDTLGEG 551
+DDKDGHL+Y G + R+ I DTLGEG
Sbjct: 532 QDDKDGHLIYSKGDFILNRFTIYDTLGEG 560
>Z68003-6|CAD44105.1| 409|Caenorhabditis elegans Hypothetical
protein E02H4.3b protein.
Length = 409
Score = 39.1 bits (87), Expect = 0.002
Identities = 17/29 (58%), Positives = 21/29 (72%)
Frame = +3
Query: 465 KDDKDGHLVYWPGYVMGARYKIIDTLGEG 551
+DDKDGHL+Y G + R+ I DTLGEG
Sbjct: 54 QDDKDGHLIYSKGDFILNRFTIYDTLGEG 82
>Z68003-5|CAA91979.2| 887|Caenorhabditis elegans Hypothetical
protein E02H4.3a protein.
Length = 887
Score = 39.1 bits (87), Expect = 0.002
Identities = 17/29 (58%), Positives = 21/29 (72%)
Frame = +3
Query: 465 KDDKDGHLVYWPGYVMGARYKIIDTLGEG 551
+DDKDGHL+Y G + R+ I DTLGEG
Sbjct: 532 QDDKDGHLIYSKGDFILNRFTIYDTLGEG 560
>Z81465-3|CAC42253.4| 800|Caenorhabditis elegans Hypothetical
protein C09F9.3 protein.
Length = 800
Score = 32.3 bits (70), Expect = 0.25
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = +1
Query: 220 GPGPMRPSDVALMMVPQRFHTENGAVAENVKARSIRGGGEMNVPNDHTTGDHLH 381
G G + S + Q+ +N A K R+I G G MN HT G+H H
Sbjct: 694 GYGALPVSKYQQQLQLQQQQQQNEKKASQDKHRNINGHGHMNGNGTHTNGNHQH 747
>U41031-2|AAA82619.2| 615|Caenorhabditis elegans Hypothetical
protein C16B8.2 protein.
Length = 615
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +1
Query: 286 NGAVAENVKARSIRGGGE-MNVPNDHTTGDHLHLTDGGDI 402
N A+ ENVK S G GE + P TT D+ + + +
Sbjct: 17 NAAIEENVKKLSYEGSGEAVEDPEPSTTVDYFNAANNSAV 56
>L15314-7|AAF99989.1| 346|Caenorhabditis elegans Hypothetical
protein K06H7.8 protein.
Length = 346
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 501 GYVMGARYKIIDTLGEGPSAS 563
G V+G RYK++ LGEG S
Sbjct: 13 GAVVGKRYKVVQKLGEGGCGS 33
>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform d protein.
Length = 2350
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1
Query: 325 RGGGEMNVPNDHTTGDHLHLTDGGD 399
RGGGE+++P ++GD +H DG D
Sbjct: 1018 RGGGEIDIP---SSGDVIHGRDGRD 1039
>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform b protein.
Length = 2117
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1
Query: 325 RGGGEMNVPNDHTTGDHLHLTDGGD 399
RGGGE+++P ++GD +H DG D
Sbjct: 1091 RGGGEIDIP---SSGDVIHGRDGRD 1112
>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform a protein.
Length = 2396
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1
Query: 325 RGGGEMNVPNDHTTGDHLHLTDGGD 399
RGGGE+++P ++GD +H DG D
Sbjct: 1091 RGGGEIDIP---SSGDVIHGRDGRD 1112
>AL021473-2|CAA16304.1| 301|Caenorhabditis elegans Hypothetical
protein Y20C6A.3 protein.
Length = 301
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2
Query: 392 EETSSRRIISAVTPRTELPGTLLRQGRQGRTSGLLAW 502
++ RR+ + PRT+ P L +Q G S +L W
Sbjct: 194 DKKMKRRVNDEMRPRTDPPTDLSQQACYGTVSDMLDW 230
>AC025724-8|AAG23381.1| 460|Caenorhabditis elegans Hypothetical
protein Y67D8C.2 protein.
Length = 460
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2
Query: 392 EETSSRRIISAVTPRTELPGTLLRQGRQGRTSGLLAW 502
++ RR+ + PRT+ P L +Q G S +L W
Sbjct: 353 DKKMKRRVNEEMRPRTDPPTDLSQQACYGTVSDILDW 389
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,896,435
Number of Sequences: 27780
Number of extensions: 195613
Number of successful extensions: 554
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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