Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_M16
         (577 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy...   200   1e-52
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac...   200   1e-52
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo...    49   6e-07
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    30   0.28 
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    28   0.85 
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po...    28   0.85 
SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces p...    28   1.1  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    27   2.0  
SPBC11G11.02c |end3||actin cortical patch component End3 |Schizo...    25   7.9  

>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score =  200 bits (488), Expect = 1e-52
 Identities = 95/134 (70%), Positives = 110/134 (82%)
 Frame = +2

Query: 77  AQSTVNHRREQRLGHKEFKKPTWVPDGRRNPFGGASHAKGIVLEKVGVEAKQPNSAIRKC 256
           A+   NHRRE+R     +KK       + +PFGG+SHAKGIV+EK+GVEAKQPNSAIRKC
Sbjct: 10  ARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQPNSAIRKC 69

Query: 257 VRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVS 436
           VRVQLIKNGKKVTAFVP DGCLN ++ENDEVL++GFGRKG A GDIPGVRFKVVKVA V 
Sbjct: 70  VRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRFKVVKVAGVG 129

Query: 437 LLALYKEKKERPRS 478
           L AL+ EKKE+PR+
Sbjct: 130 LSALFHEKKEKPRA 143


>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  200 bits (488), Expect = 1e-52
 Identities = 95/134 (70%), Positives = 110/134 (82%)
 Frame = +2

Query: 77  AQSTVNHRREQRLGHKEFKKPTWVPDGRRNPFGGASHAKGIVLEKVGVEAKQPNSAIRKC 256
           A+   NHRRE+R     +KK       + +PFGG+SHAKGIV+EK+GVEAKQPNSAIRKC
Sbjct: 10  ARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQPNSAIRKC 69

Query: 257 VRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVS 436
           VRVQLIKNGKKVTAFVP DGCLN ++ENDEVL++GFGRKG A GDIPGVRFKVVKVA V 
Sbjct: 70  VRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRFKVVKVAGVG 129

Query: 437 LLALYKEKKERPRS 478
           L AL+ EKKE+PR+
Sbjct: 130 LSALFHEKKEKPRA 143


>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
           S12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 48.8 bits (111), Expect = 6e-07
 Identities = 31/82 (37%), Positives = 49/82 (59%)
 Frame = +2

Query: 176 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLV 355
           G+   +G+      V+ K+PNSA+RK  RV+L   G+ VTA++P  G  ++ +E+  VL+
Sbjct: 47  GSPFRRGVCTRVFTVKPKKPNSAVRKVARVRL-STGRSVTAYIP--GIGHNAQEHAVVLL 103

Query: 356 AGFGRKGHAVGDIPGVRFKVVK 421
            G GR      D PGV++ VV+
Sbjct: 104 RG-GR----AQDCPGVQYHVVR 120


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 29.9 bits (64), Expect = 0.28
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 456  SLYRARSDTFATLTTLNLTPGMSPTAWP 373
            S Y+ + DT+AT  TLN      PT WP
Sbjct: 1151 SKYKIK-DTYATFQTLNYIQNQQPTKWP 1177


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 28.3 bits (60), Expect = 0.85
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
 Frame = -2

Query: 216 PTFSRTMPLA*DAPPKGFRLP----SGTHVGFLNSLW 118
           P +S T+ +   APP    LP    SG H+G   S+W
Sbjct: 31  PHYSPTLSIRNPAPPSQLSLPLLLSSGAHLGHSTSIW 67


>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 449

 Score = 28.3 bits (60), Expect = 0.85
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = -3

Query: 245 WLNSAAWLQRQLFRGRCP*HEMHHRRGFAFHLVPMWAF 132
           W+    WL++Q F   C    +    GF+   +  W+F
Sbjct: 96  WIQQGVWLRKQDFLNDCKKGNLVREDGFSIFSILRWSF 133


>SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 227

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
 Frame = +3

Query: 24  VSRLFVMGKPSGVISARARKAPLIIVASSDWATRNSKSPHG---YQMEGET 167
           V  + ++G+P G++ +R R A  I+ A+   AT   KS +G   Y+++ ET
Sbjct: 121 VQAMELLGEPVGIVYSRQRDAE-IVKAAIPKATEVLKSKNGSIDYELDAET 170


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 14/43 (32%), Positives = 27/43 (62%)
 Frame = -2

Query: 456 SLYRARSDTFATLTTLNLTPGMSPTAWPLRPNPATNTSSFSSM 328
           ++Y + + +F   T ++++ G S     L P PA++TSSFS++
Sbjct: 161 TIYSSATSSFPYSTDVSVSTGTSTDIVTLPP-PASSTSSFSTI 202


>SPBC11G11.02c |end3||actin cortical patch component End3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 375

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -1

Query: 130 EFLVAQSLLATMINGALRARAEITPEGLPITNRRETRSA 14
           EF +A  +   +ING  +   +  PE L  T+++   +A
Sbjct: 61  EFAIAMKITFDLINGVYKTVPDRVPEALVSTSKKHLVAA 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,452,729
Number of Sequences: 5004
Number of extensions: 50186
Number of successful extensions: 124
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)