Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_M16
(577 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 207 4e-54
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 207 4e-54
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 120 8e-28
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746... 51 6e-07
09_04_0659 + 19282366-19282584,19282668-19282759,19282868-192829... 36 0.023
03_02_0150 + 5941560-5941739,5942027-5942118,5942232-5942298,594... 34 0.093
09_04_0660 - 19286653-19287271,19287791-19287916,19288016-192882... 32 0.28
08_02_1367 + 26432425-26432622,26434071-26434162,26434337-264344... 32 0.28
12_02_0870 - 23852923-23853228,23853416-23853728,23853813-238539... 31 0.50
09_04_0614 - 18962141-18962716,18962839-18963119,18964092-18964293 31 0.87
06_02_0197 - 12912818-12913411,12913505-12913732 30 1.5
01_01_0161 - 1385408-1385566,1385815-1385943,1386164-1386322,138... 29 2.7
04_03_0232 - 13049649-13052807 29 3.5
04_03_0770 + 19420249-19420359,19421691-19421763,19421887-194219... 28 4.6
03_05_0300 - 22894282-22894628,22894713-22894809,22896062-228962... 28 4.6
01_01_0678 - 5209468-5209534,5209588-5209755,5212135-5212292 27 8.1
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 207 bits (506), Expect = 4e-54
Identities = 97/128 (75%), Positives = 111/128 (86%)
Frame = +2
Query: 95 HRREQRLGHKEFKKPTWVPDGRRNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 274
HRR QR K +KK + + + + PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQL+
Sbjct: 16 HRRNQRWADKAYKK-SHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLV 74
Query: 275 KNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK 454
KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K
Sbjct: 75 KNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFK 134
Query: 455 EKKERPRS 478
EKKE+PRS
Sbjct: 135 EKKEKPRS 142
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 207 bits (506), Expect = 4e-54
Identities = 97/128 (75%), Positives = 111/128 (86%)
Frame = +2
Query: 95 HRREQRLGHKEFKKPTWVPDGRRNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 274
HRR QR K +KK + + + + PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQL+
Sbjct: 186 HRRNQRWADKAYKK-SHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLV 244
Query: 275 KNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK 454
KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K
Sbjct: 245 KNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFK 304
Query: 455 EKKERPRS 478
EKKE+PRS
Sbjct: 305 EKKEKPRS 312
Score = 204 bits (497), Expect = 5e-53
Identities = 95/126 (75%), Positives = 109/126 (86%)
Frame = +2
Query: 95 HRREQRLGHKEFKKPTWVPDGRRNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 274
HRR QR K +KK + + + + PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQL+
Sbjct: 16 HRRNQRWADKAYKK-SHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLV 74
Query: 275 KNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK 454
KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K
Sbjct: 75 KNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFK 134
Query: 455 EKKERP 472
EKKE+P
Sbjct: 135 EKKEKP 140
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 120 bits (289), Expect = 8e-28
Identities = 56/89 (62%), Positives = 68/89 (76%)
Frame = +2
Query: 95 HRREQRLGHKEFKKPTWVPDGRRNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 274
HRR QR K +KK + + ++ PF G+SHAKGIVLEK+G+EAKQPNSAI KC RVQL+
Sbjct: 87 HRRNQRWADKAYKKSHFGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAICKCARVQLV 145
Query: 275 KNGKKVTAFVPRDGCLNHIEENDEVLVAG 361
KNGKK+ AFVP DGCLN I+EN+ V G
Sbjct: 146 KNGKKIAAFVPNDGCLNFIKENEVAYVDG 174
>05_03_0026 +
7466017-7466034,7466340-7466405,7466572-7466833,
7467254-7467294
Length = 128
Score = 51.2 bits (117), Expect = 6e-07
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = +2
Query: 341 DEVLVAGFGRKGHAVGDIPGVRFKVVK 421
DEVL++GFG KGHAVGDI GVRF+VVK
Sbjct: 67 DEVLISGFGHKGHAVGDIRGVRFEVVK 93
>09_04_0659 +
19282366-19282584,19282668-19282759,19282868-19282958,
19283393-19283512,19283638-19283730,19283795-19283933,
19284060-19284141,19284229-19284361,19285024-19286010
Length = 651
Score = 35.9 bits (79), Expect = 0.023
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = -2
Query: 225 ASTPTFSRTMPLA*DAPPKGFRLPSGTHVGFLNSLWPNR 109
A T TF+R A +G+R P H FL +LWPNR
Sbjct: 240 ADTLTFTRNHLCGKPANAEGYRDPGFIHTAFLKNLWPNR 278
>03_02_0150 +
5941560-5941739,5942027-5942118,5942232-5942298,
5942401-5942523,5942692-5942784,5943149-5943278,
5943483-5943564,5943682-5943814,5944246-5944451,
5944538-5944663,5945024-5945333,5945518-5945643,
5946151-5946456
Length = 657
Score = 33.9 bits (74), Expect = 0.093
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = -2
Query: 225 ASTPTFSRTMPLA*DAPPKGFRLPSGTHVGFLNSLWPN 112
A T TFSR+ A G+R P H FL LWPN
Sbjct: 217 AGTLTFSRSTMCGPPARTVGWRDPGFIHTSFLKDLWPN 254
>09_04_0660 -
19286653-19287271,19287791-19287916,19288016-19288221,
19288417-19288549,19288632-19288713,19288906-19289035,
19289187-19289279,19289391-19289510,19289594-19289660,
19290079-19290137,19290719-19290943
Length = 619
Score = 32.3 bits (70), Expect = 0.28
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = -2
Query: 225 ASTPTFSRTMPLA*DAPPKGFRLPSGTHVGFLNSLWPNR 109
A T TF R A G+R P H FL LWPN+
Sbjct: 220 AGTVTFDRESLCGEPARTVGWRDPGFIHTAFLTDLWPNK 258
>08_02_1367 +
26432425-26432622,26434071-26434162,26434337-26434403,
26434519-26434638,26434792-26435023,26435525-26435606,
26435985-26436117,26436332-26436537,26436633-26436758,
26437208-26437907
Length = 651
Score = 32.3 bits (70), Expect = 0.28
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -2
Query: 225 ASTPTFSRTMPLA*DAPPKGFRLPSGTHVGFLNSLWPNR 109
A T TF+R A G+R P H FL LWPN+
Sbjct: 225 AGTLTFNRGSMCGEPARTVGWRDPGFIHTAFLRDLWPNK 263
>12_02_0870 -
23852923-23853228,23853416-23853728,23853813-23853938,
23854038-23854243,23854311-23854443,23854607-23854688,
23854785-23854914,23855034-23855126,23855211-23855333,
23855786-23855977,23858230-23858394,23858697-23858768,
23858826-23858945,23859873-23859949,23860032-23860398,
23860738-23861871
Length = 1212
Score = 31.5 bits (68), Expect = 0.50
Identities = 16/38 (42%), Positives = 18/38 (47%)
Frame = -2
Query: 225 ASTPTFSRTMPLA*DAPPKGFRLPSGTHVGFLNSLWPN 112
A T TFSR A G+R P H FL LWP+
Sbjct: 813 AGTLTFSRNSMCGSPARTVGWRDPGYIHTSFLKELWPD 850
>09_04_0614 - 18962141-18962716,18962839-18963119,18964092-18964293
Length = 352
Score = 30.7 bits (66), Expect = 0.87
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = -2
Query: 423 TLTTLNLTPGMSPTAWPLRPNPATNTSSFSSMWLRQPSRGTNAV 292
TL+ LNL G SP P P P + SM + QP TN V
Sbjct: 254 TLSGLNLNLGSSPAMPPPPPPPPQSILQAMSMPMNQPRSTTNQV 297
>06_02_0197 - 12912818-12913411,12913505-12913732
Length = 273
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -3
Query: 266 VHEHTYEWLNSAAWLQRQLFRGRCP*HEMHHRR 168
V +H WL +A+ LQR +FR H++HH+R
Sbjct: 186 VDDHCGLWLPAASPLQR-VFRNNAAYHDVHHQR 217
>01_01_0161 - 1385408-1385566,1385815-1385943,1386164-1386322,
1387228-1387571,1387641-1387905,1387998-1388075,
1388207-1388260,1389341-1389361,1389453-1389578,
1389696-1389863,1389923-1390313,1390629-1390710,
1391175-1391536,1391806-1392630,1392956-1393476
Length = 1227
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = -2
Query: 180 APPKGFRLPSGTHVG 136
APP+G RLPSGT VG
Sbjct: 961 APPRGPRLPSGTFVG 975
>04_03_0232 - 13049649-13052807
Length = 1052
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = -3
Query: 527 ASRRRQRVTHLSQCKPMTWASPSFL-CTEL 441
++R R RV HLSQC +++SP FL C+ L
Sbjct: 346 SNRSRLRVLHLSQC-TFSFSSPPFLGCSNL 374
>04_03_0770 +
19420249-19420359,19421691-19421763,19421887-19421964,
19422223-19422284,19422404-19422472,19422672-19422700,
19422784-19422991,19423071-19423301,19424079-19424132,
19425344-19426292,19426853-19426863
Length = 624
Score = 28.3 bits (60), Expect = 4.6
Identities = 18/74 (24%), Positives = 32/74 (43%)
Frame = -1
Query: 226 GFNANFFEDDALSMRCTTEGVSPSIWYPCGLFEFLVAQSLLATMINGALRARAEITPEGL 47
GF N + M +TEG+S + YP +F + + +G + ++A +
Sbjct: 400 GFKPNSMFSGPVKMPSSTEGISAPLVYPYATSDF---KKMKREAFSGPIPSKAGLNKPLF 456
Query: 46 PITNRRETRSAPRA 5
T+ R + PRA
Sbjct: 457 SATDLRAPMNYPRA 470
>03_05_0300 -
22894282-22894628,22894713-22894809,22896062-22896200,
22896923-22897230
Length = 296
Score = 28.3 bits (60), Expect = 4.6
Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 2/111 (1%)
Frame = +2
Query: 152 DGRRNPFGGASHAKGIVLEKVGVEAK--QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLN 325
DG P GG+S + + + V + P S+ RV L G+ A V L
Sbjct: 65 DGPVRPCGGSSDERPMAYTFLSVSSSPSSPPSSSPSNFRVTLNLQGE--LAHVS----LK 118
Query: 326 HIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 478
H+++ND V V+G H V D G + K+ +V+ L ++ +RP++
Sbjct: 119 HLKQNDLVYVSGLLNSYHKV-DPSGEKHTFYKI-HVTDLNYVLDQNQRPQN 167
>01_01_0678 - 5209468-5209534,5209588-5209755,5212135-5212292
Length = 130
Score = 27.5 bits (58), Expect = 8.1
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Frame = -2
Query: 222 STPTF----SRTMPLA*DAPPKGFRLPSGTHVGFLNSLWPNRCS 103
STP F S +P+ PP RLP G G L+ +RCS
Sbjct: 12 STPEFWPEGSGILPMDERPPPPALRLPRGRRDGGLSGWLRSRCS 55
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,628,464
Number of Sequences: 37544
Number of extensions: 385091
Number of successful extensions: 1013
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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