Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_M16
(577 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S... 223 3e-58
CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein. 223 3e-58
BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23 p... 223 3e-58
AB007158-1|BAA25822.1| 59|Homo sapiens ribosomal protein S23 p... 119 8e-27
Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal p... 54 4e-07
CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein. 54 4e-07
BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal... 54 4e-07
BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal... 54 4e-07
BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal... 54 4e-07
AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12 p... 54 4e-07
BC035230-1|AAH35230.2| 409|Homo sapiens zinc finger, DHHC-type ... 29 8.9
>D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S28
homologue protein.
Length = 143
Score = 223 bits (546), Expect = 3e-58
Identities = 109/134 (81%), Positives = 117/134 (87%)
Frame = +2
Query: 77 AQSTVNHRREQRLGHKEFKKPTWVPDGRRNPFGGASHAKGIVLEKVGVEAKQPNSAIRKC 256
A+ +HRR+Q+ K++KK + NPFGGASHAKGIVLEKVGVEAKQPNSAIRKC
Sbjct: 10 ARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKC 69
Query: 257 VRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVS 436
VRVQLIKNGKK+TAFVP DGCLN IEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVS
Sbjct: 70 VRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVS 129
Query: 437 LLALYKEKKERPRS 478
LLALYK KKERPRS
Sbjct: 130 LLALYKGKKERPRS 143
>CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein.
Length = 143
Score = 223 bits (546), Expect = 3e-58
Identities = 109/134 (81%), Positives = 117/134 (87%)
Frame = +2
Query: 77 AQSTVNHRREQRLGHKEFKKPTWVPDGRRNPFGGASHAKGIVLEKVGVEAKQPNSAIRKC 256
A+ +HRR+Q+ K++KK + NPFGGASHAKGIVLEKVGVEAKQPNSAIRKC
Sbjct: 10 ARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKC 69
Query: 257 VRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVS 436
VRVQLIKNGKK+TAFVP DGCLN IEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVS
Sbjct: 70 VRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVS 129
Query: 437 LLALYKEKKERPRS 478
LLALYK KKERPRS
Sbjct: 130 LLALYKGKKERPRS 143
>BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23
protein.
Length = 143
Score = 223 bits (546), Expect = 3e-58
Identities = 109/134 (81%), Positives = 117/134 (87%)
Frame = +2
Query: 77 AQSTVNHRREQRLGHKEFKKPTWVPDGRRNPFGGASHAKGIVLEKVGVEAKQPNSAIRKC 256
A+ +HRR+Q+ K++KK + NPFGGASHAKGIVLEKVGVEAKQPNSAIRKC
Sbjct: 10 ARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKC 69
Query: 257 VRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVS 436
VRVQLIKNGKK+TAFVP DGCLN IEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVS
Sbjct: 70 VRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVS 129
Query: 437 LLALYKEKKERPRS 478
LLALYK KKERPRS
Sbjct: 130 LLALYKGKKERPRS 143
>AB007158-1|BAA25822.1| 59|Homo sapiens ribosomal protein S23
protein.
Length = 59
Score = 119 bits (286), Expect = 8e-27
Identities = 56/59 (94%), Positives = 56/59 (94%)
Frame = +2
Query: 299 FVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPR 475
FVP DGCLN IEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKERPR
Sbjct: 1 FVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPR 59
>Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 precursor protein.
Length = 138
Score = 54.0 bits (124), Expect = 4e-07
Identities = 35/91 (38%), Positives = 51/91 (56%)
Frame = +2
Query: 149 PDGRRNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNH 328
P + P G KG+VL + K+PNSA RKC RV+L G++ F+P +G +
Sbjct: 45 PPRKLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HT 101
Query: 329 IEENDEVLVAGFGRKGHAVGDIPGVRFKVVK 421
++E+ VLV G GR D+PGV+ VV+
Sbjct: 102 LQEHQIVLVEG-GR----TQDLPGVKLTVVR 127
>CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein.
Length = 138
Score = 54.0 bits (124), Expect = 4e-07
Identities = 35/91 (38%), Positives = 51/91 (56%)
Frame = +2
Query: 149 PDGRRNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNH 328
P + P G KG+VL + K+PNSA RKC RV+L G++ F+P +G +
Sbjct: 45 PPRKLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HT 101
Query: 329 IEENDEVLVAGFGRKGHAVGDIPGVRFKVVK 421
++E+ VLV G GR D+PGV+ VV+
Sbjct: 102 LQEHQIVLVEG-GR----TQDLPGVKLTVVR 127
>BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 54.0 bits (124), Expect = 4e-07
Identities = 35/91 (38%), Positives = 51/91 (56%)
Frame = +2
Query: 149 PDGRRNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNH 328
P + P G KG+VL + K+PNSA RKC RV+L G++ F+P +G +
Sbjct: 45 PPRKLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HT 101
Query: 329 IEENDEVLVAGFGRKGHAVGDIPGVRFKVVK 421
++E+ VLV G GR D+PGV+ VV+
Sbjct: 102 LQEHQIVLVEG-GR----TQDLPGVKLTVVR 127
>BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 54.0 bits (124), Expect = 4e-07
Identities = 35/91 (38%), Positives = 51/91 (56%)
Frame = +2
Query: 149 PDGRRNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNH 328
P + P G KG+VL + K+PNSA RKC RV+L G++ F+P +G +
Sbjct: 45 PPRKLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HT 101
Query: 329 IEENDEVLVAGFGRKGHAVGDIPGVRFKVVK 421
++E+ VLV G GR D+PGV+ VV+
Sbjct: 102 LQEHQIVLVEG-GR----TQDLPGVKLTVVR 127
>BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 54.0 bits (124), Expect = 4e-07
Identities = 35/91 (38%), Positives = 51/91 (56%)
Frame = +2
Query: 149 PDGRRNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNH 328
P + P G KG+VL + K+PNSA RKC RV+L G++ F+P +G +
Sbjct: 45 PPRKLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HT 101
Query: 329 IEENDEVLVAGFGRKGHAVGDIPGVRFKVVK 421
++E+ VLV G GR D+PGV+ VV+
Sbjct: 102 LQEHQIVLVEG-GR----TQDLPGVKLTVVR 127
>AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12
protein.
Length = 138
Score = 54.0 bits (124), Expect = 4e-07
Identities = 35/91 (38%), Positives = 51/91 (56%)
Frame = +2
Query: 149 PDGRRNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNH 328
P + P G KG+VL + K+PNSA RKC RV+L G++ F+P +G +
Sbjct: 45 PPRKLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HT 101
Query: 329 IEENDEVLVAGFGRKGHAVGDIPGVRFKVVK 421
++E+ VLV G GR D+PGV+ VV+
Sbjct: 102 LQEHQIVLVEG-GR----TQDLPGVKLTVVR 127
>BC035230-1|AAH35230.2| 409|Homo sapiens zinc finger, DHHC-type
containing 23 protein.
Length = 409
Score = 29.5 bits (63), Expect = 8.9
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 118 PQGIQKAHMGTRWKAKPLRWCISC*GHRPRKSWR 219
P+G K G+ KAK WC C RP ++WR
Sbjct: 242 PKGSSKMPAGSPTKAKE-DWCAKCQLVRPARAWR 274
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,142,012
Number of Sequences: 237096
Number of extensions: 2185258
Number of successful extensions: 4016
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4009
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5929224630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -