Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_M15
         (515 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces pomb...    30   0.24 
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    29   0.31 
SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces pom...    26   3.8  
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   5.1  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    25   8.9  

>SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 16/46 (34%), Positives = 29/46 (63%)
 Frame = +3

Query: 192 LQHRIVDRVRNYDYYKSALKTLRNHSGAVHYLGEPMKDKRFKLSDK 329
           L++ ++DR   YD Y+  LK++RN   +V    +P ++K+ KL D+
Sbjct: 114 LENYLIDR---YDQYRMTLKSIRNIESSV----QPSREKKQKLLDQ 152


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 29.5 bits (63), Expect = 0.31
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +3

Query: 156 WGGLVVSGTGFYLQHRIVDRVRNYDYYKSALKTLRNHSGAV-HYLGEPMKDKRFKLSDKE 332
           W   + SG+GFY + R+      Y Y+      LR+ +G+V H+ G        KL+++E
Sbjct: 779 WKSSLFSGSGFYHEIRLQRFDNVYRYFICRAVPLRDCTGSVLHFFGTMTDVHDQKLAERE 838


>SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = +3

Query: 192 LQHRIVDRVRNYDYYKSALKTLRNHSGAVHYLGEPMKDKRFKL 320
           L+  +VDR   YD Y+ +LKT+R+   +V    +P + K+ KL
Sbjct: 113 LEEHMVDR---YDQYRVSLKTIRDIEASV----QPTRVKKEKL 148


>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -2

Query: 478 LGLDFKSSSALVIFHILSTLSAQK*KVPLSLGPYTGMQNRAFSPS 344
           +G +F +   LVI  +L  + AQ   V   L    GM +++ SPS
Sbjct: 444 IGREFLAQFHLVIKRVLINIHAQPNAVYCRLMEEVGMTSKSISPS 488


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 163 PPQAAICTKVRVDIVMSNNY 104
           PPQ  IC   R+ +V   NY
Sbjct: 521 PPQHRICMTTRLSVVEETNY 540


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,024,982
Number of Sequences: 5004
Number of extensions: 40994
Number of successful extensions: 103
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)