Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_M15
         (515 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0122 - 8669422-8669609,8669759-8670111,8670669-8670824,867...    31   0.55 
06_03_0012 + 15383628-15383823,15383915-15384100,15384326-15385518     30   0.96 
04_03_1031 + 21850857-21851009,21852229-21852350,21852447-218528...    28   5.1  
01_03_0225 + 13960843-13962417                                         27   6.8  
02_02_0725 + 13367157-13367364,13367492-13367773,13367985-13369195     27   8.9  

>05_03_0122 -
           8669422-8669609,8669759-8670111,8670669-8670824,
           8670999-8671168,8672133-8672297,8673190-8673384,
           8673506-8673634,8673759-8673980
          Length = 525

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 19/70 (27%), Positives = 34/70 (48%)
 Frame = +3

Query: 234 YKSALKTLRNHSGAVHYLGEPMKDKRFKLSDKENNFSDGENARFCIPVYGPKDKGTFYFW 413
           + S LK +   +G + ++GE + + R   + KE        A+  + VYG    G  Y+ 
Sbjct: 446 FSSELKNVTTQNGPLTFVGEWVAEWRVPNATKEEY---QRYAKVQMDVYGQATFGWSYWT 502

Query: 414 AERVDNIWNI 443
            + V+N WN+
Sbjct: 503 LKNVNNHWNL 512


>06_03_0012 + 15383628-15383823,15383915-15384100,15384326-15385518
          Length = 524

 Score = 30.3 bits (65), Expect = 0.96
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = +3

Query: 138 LVQIAAWGGLVVSGTGFYLQHRIVDRVRNYDYYKSALK-TLRNHSGAVHYL-GEPM 299
           LVQI  WG +    T FY Q     R+R  +YY S  + TL++     HY+  +PM
Sbjct: 430 LVQIVPWGKMDWMATNFYGQPARDMRLRYVEYYVSEEETTLKDKYPRDHYVFKDPM 485


>04_03_1031 +
           21850857-21851009,21852229-21852350,21852447-21852891,
           21852981-21853087,21853192-21854524,21854632-21854859,
           21854951-21855181,21855278-21855537,21855651-21856113
          Length = 1113

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 21/63 (33%), Positives = 28/63 (44%)
 Frame = -2

Query: 484 LVLGLDFKSSSALVIFHILSTLSAQK*KVPLSLGPYTGMQNRAFSPSEKLFSLSLNLKRL 305
           L+L     SSSA  I H+L  L + K K P S       +    S + KL   SL +   
Sbjct: 337 LLLSQPTGSSSAENIDHLLKRLGSPKRKAPASRSRVAAKKPAKGSETSKLSRYSLRVVLC 396

Query: 304 SFM 296
           S+M
Sbjct: 397 SYM 399


>01_03_0225 + 13960843-13962417
          Length = 524

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -1

Query: 446 SYIPYIIYSFCPKIKSTLVFRAIYRYAKSCVFSVRK 339
           SYI + +++FCP +   L FR   R+ K  V S+R+
Sbjct: 224 SYISFQVFAFCPTVTKRLFFR---RWQK--VLSIRR 254


>02_02_0725 + 13367157-13367364,13367492-13367773,13367985-13369195
          Length = 566

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +3

Query: 138 LVQIAAWGGLVVSGTGFYLQHRIVDRVRNYDYYKSALKTLRNHS 269
           +VQI  WG +    T FY Q     ++R  +YY    +T   H+
Sbjct: 472 VVQIVPWGNMDWMATNFYGQPARDMQLRYVEYYVGEEETSLKHN 515


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,149,733
Number of Sequences: 37544
Number of extensions: 233817
Number of successful extensions: 443
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)