Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_M15
         (515 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024696-13|AAK84505.1|  346|Caenorhabditis elegans Hypothetical...    31   0.65 
AC006697-3|AAF60392.1|  346|Caenorhabditis elegans Hypothetical ...    31   0.65 
AL023810-4|CAD59138.1|  384|Caenorhabditis elegans Hypothetical ...    27   8.0  
AL008881-3|CAD59164.1|  384|Caenorhabditis elegans Hypothetical ...    27   8.0  
AL008881-1|CAA15517.2|  343|Caenorhabditis elegans Hypothetical ...    27   8.0  

>AC024696-13|AAK84505.1|  346|Caenorhabditis elegans Hypothetical
           protein F07B7.1 protein.
          Length = 346

 Score = 30.7 bits (66), Expect = 0.65
 Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
 Frame = +3

Query: 180 TGFYLQHRIVDRVRNYDYYKSALKTLRNHSGAVHYLG--EPMKDKRFKLSDKENNFSDGE 353
           T FYL HR  +R R+  Y    L+ L   S A H+L   EP     ++    EN    G 
Sbjct: 220 TTFYL-HR-ENRARSNGYCNKCLQPLIQ-SDAGHHLSCTEPKVSCAYRHEHSENQAKSGH 276

Query: 354 NARFCIPVYGPK-DKGT 401
           N  FC   +G K +K T
Sbjct: 277 NEVFCPLQFGKKPEKAT 293


>AC006697-3|AAF60392.1|  346|Caenorhabditis elegans Hypothetical
           protein W09B7.1 protein.
          Length = 346

 Score = 30.7 bits (66), Expect = 0.65
 Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
 Frame = +3

Query: 180 TGFYLQHRIVDRVRNYDYYKSALKTLRNHSGAVHYLG--EPMKDKRFKLSDKENNFSDGE 353
           T FYL HR  +R R+  Y    L+ L   S A H+L   EP     ++    EN    G 
Sbjct: 220 TTFYL-HR-ENRARSNGYCNKCLQPLIQ-SDAGHHLSCTEPKVSCAYRHEHSENQAKSGH 276

Query: 354 NARFCIPVYGPK-DKGT 401
           N  FC   +G K +K T
Sbjct: 277 NEVFCPLQFGKKPEKAT 293


>AL023810-4|CAD59138.1|  384|Caenorhabditis elegans Hypothetical
           protein Y9C2UA.1b protein.
          Length = 384

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 449 FSYIPYIIYSFCPKIKSTLVFRAIY 375
           F Y+  II +  PK+ +++VF AI+
Sbjct: 143 FVYLEQIILTIAPKLANSIVFNAIF 167


>AL008881-3|CAD59164.1|  384|Caenorhabditis elegans Hypothetical
           protein Y9C2UA.1b protein.
          Length = 384

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 449 FSYIPYIIYSFCPKIKSTLVFRAIY 375
           F Y+  II +  PK+ +++VF AI+
Sbjct: 143 FVYLEQIILTIAPKLANSIVFNAIF 167


>AL008881-1|CAA15517.2|  343|Caenorhabditis elegans Hypothetical
           protein Y9C2UA.1a protein.
          Length = 343

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 449 FSYIPYIIYSFCPKIKSTLVFRAIY 375
           F Y+  II +  PK+ +++VF AI+
Sbjct: 102 FVYLEQIILTIAPKLANSIVFNAIF 126


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,978,879
Number of Sequences: 27780
Number of extensions: 221224
Number of successful extensions: 485
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)