Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_M13
         (98 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    23   4.1  
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy...    22   9.4  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    22   9.4  

>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 3   TKAVPANYHTPPYLTA 50
           ++  PANY+TP Y TA
Sbjct: 199 SRGSPANYNTPYYPTA 214


>SPCC1739.06c |||uroporphyrin methyltransferase
          |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 496

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 71 VVVDVGSRRQIWRRVIVC 18
          VVV VGS +  +RRV +C
Sbjct: 11 VVVVVGSGKNAYRRVNLC 28


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 46  RREPTSTTTGLLRKIS 93
           R EP STTT L ++I+
Sbjct: 951 RSEPVSTTTKLAKRIT 966


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 414,713
Number of Sequences: 5004
Number of extensions: 3656
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 2,362,478
effective HSP length: 14
effective length of database: 2,292,422
effective search space used: 41263596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)