Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_M13
         (98 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0486 - 34261577-34261692,34261830-34262094,34263164-342632...    29   0.51 
05_01_0090 + 598311-599597,599884-599997,600186-600450,600994-60...    27   1.6  
04_03_0359 - 14864750-14864998,14865122-14865345,14867358-148674...    26   3.6  
02_05_0371 + 28364896-28366182,28366510-28366623,28366861-283671...    26   4.7  
07_03_1789 - 29527145-29527204,29527277-29527358,29527457-295275...    25   8.3  
05_06_0118 + 25735966-25737601,25737698-25738488                       25   8.3  

>03_06_0486 -
           34261577-34261692,34261830-34262094,34263164-34263277,
           34263371-34264795
          Length = 639

 Score = 29.1 bits (62), Expect = 0.51
 Identities = 8/21 (38%), Positives = 17/21 (80%)
 Frame = +3

Query: 36  PYLTARTDVYYHRLTTKDKFL 98
           PY++    +++H+L+T+D+FL
Sbjct: 533 PYISCNPSLFHHKLSTRDRFL 553


>05_01_0090 +
           598311-599597,599884-599997,600186-600450,600994-601109
          Length = 593

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 36  PYLTARTDVYYHRLTTKDKFL 98
           PY++ R  + +HRL  +DKFL
Sbjct: 487 PYISCRPYIRHHRLGAQDKFL 507


>04_03_0359 -
           14864750-14864998,14865122-14865345,14867358-14867475,
           14867586-14867960,14869257-14869673
          Length = 460

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 42  LTARTDVYYHRLTTKDKFL 98
           L +  DV YHR+T KD+F+
Sbjct: 354 LISMPDVSYHRITEKDEFV 372


>02_05_0371 +
           28364896-28366182,28366510-28366623,28366861-28367125,
           28367981-28368105
          Length = 596

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +3

Query: 36  PYLTARTDVYYHRLTTKDKFL 98
           PY++    + +H+LT +D+FL
Sbjct: 487 PYISCTPSLCHHKLTARDQFL 507


>07_03_1789 -
           29527145-29527204,29527277-29527358,29527457-29527524,
           29527633-29527722,29527811-29527888,29527969-29528064,
           29528217-29528300,29528405-29528605,29528967-29529059,
           29529573-29529639,29530843-29530901,29531036-29531202,
           29531420-29531509,29531868-29531916,29532109-29532174,
           29532260-29532434,29532528-29532649
          Length = 548

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 13  CRQTITRLHI*RREPTSTTTGLLRKIS 93
           C QT+T+L I  RE    T G  + I+
Sbjct: 368 CEQTLTKLGIEHREAVDDTAGAAKLIA 394


>05_06_0118 + 25735966-25737601,25737698-25738488
          Length = 808

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 10  PCRQTITRLHI*RREPTST 66
           PC QTI  LH+ RR    T
Sbjct: 737 PCEQTIENLHLIRRRSNRT 755


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,846,681
Number of Sequences: 37544
Number of extensions: 25847
Number of successful extensions: 95
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 14,793,348
effective HSP length: 14
effective length of database: 14,267,732
effective search space used: 256819176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)