Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_M13
         (98 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006834-5|AAF40007.1|  451|Caenorhabditis elegans Hypothetical ...    39   5e-04
Z81496-11|CAB04069.2|  448|Caenorhabditis elegans Hypothetical p...    25   5.4  
AY204204-1|AAO39205.1|  448|Caenorhabditis elegans nuclear recep...    25   5.4  
Z82053-9|CAJ85768.1|  189|Caenorhabditis elegans Hypothetical pr...    25   7.2  
Z82053-8|CAB61018.2|  309|Caenorhabditis elegans Hypothetical pr...    25   7.2  
AF070968-1|AAD15926.1|  309|Caenorhabditis elegans PAR-6 protein.      25   7.2  

>AC006834-5|AAF40007.1|  451|Caenorhabditis elegans Hypothetical
           protein ZK973.3 protein.
          Length = 451

 Score = 38.7 bits (86), Expect = 5e-04
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = +3

Query: 15  PANYHTPPYLTARTDVYYHRLTTKDKFL 98
           P +  TPPYL+   +V+YH+LT  D+FL
Sbjct: 297 PQHLFTPPYLSTSPEVFYHKLTPNDRFL 324


>Z81496-11|CAB04069.2|  448|Caenorhabditis elegans Hypothetical
           protein F09C6.9 protein.
          Length = 448

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 8/17 (47%), Positives = 15/17 (88%)
 Frame = +3

Query: 48  ARTDVYYHRLTTKDKFL 98
           A+T +++HRL ++DKF+
Sbjct: 273 AKTFMFFHRLDSRDKFI 289


>AY204204-1|AAO39205.1|  448|Caenorhabditis elegans nuclear receptor
           NHR-116 protein.
          Length = 448

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 8/17 (47%), Positives = 15/17 (88%)
 Frame = +3

Query: 48  ARTDVYYHRLTTKDKFL 98
           A+T +++HRL ++DKF+
Sbjct: 273 AKTFMFFHRLDSRDKFI 289


>Z82053-9|CAJ85768.1|  189|Caenorhabditis elegans Hypothetical
          protein T26E3.3b protein.
          Length = 189

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 86 FRSKPVVVDVGSRRQIWRRVIVCRHG 9
          FR    ++DV    +  RRV +C+HG
Sbjct: 18 FRQVSAIIDVDIVPEAHRRVRLCKHG 43


>Z82053-8|CAB61018.2|  309|Caenorhabditis elegans Hypothetical
           protein T26E3.3a protein.
          Length = 309

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 86  FRSKPVVVDVGSRRQIWRRVIVCRHG 9
           FR    ++DV    +  RRV +C+HG
Sbjct: 138 FRQVSAIIDVDIVPEAHRRVRLCKHG 163


>AF070968-1|AAD15926.1|  309|Caenorhabditis elegans PAR-6 protein.
          Length = 309

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 86  FRSKPVVVDVGSRRQIWRRVIVCRHG 9
           FR    ++DV    +  RRV +C+HG
Sbjct: 138 FRQVSAIIDVDIVPEAHRRVRLCKHG 163


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,299,302
Number of Sequences: 27780
Number of extensions: 20639
Number of successful extensions: 79
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 12,740,198
effective HSP length: 14
effective length of database: 12,351,278
effective search space used: 222323004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)