Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_M13
         (98 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   2.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   2.3  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    18   9.3  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    18   9.3  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    18   9.3  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.2 bits (40), Expect = 2.3
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +2

Query: 5   EGRAGKLSHAS 37
           E RAGK++HA+
Sbjct: 502 ENRAGKVTHAA 512


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.2 bits (40), Expect = 2.3
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +2

Query: 5   EGRAGKLSHAS 37
           E RAGK++HA+
Sbjct: 502 ENRAGKVTHAA 512


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 18.2 bits (35), Expect = 9.3
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = +1

Query: 31  RLHI*RREPTSTTTGLL 81
           R H+ +    STT G++
Sbjct: 361 RFHLAKERKASTTLGII 377


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 18.2 bits (35), Expect = 9.3
 Identities = 6/21 (28%), Positives = 11/21 (52%)
 Frame = -3

Query: 63  RRRFSPSNMEACDSLPARPSC 1
           RR+     ++ C ++  RP C
Sbjct: 236 RRKCQECRLKKCLTVGMRPEC 256


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
          protein.
          Length = 72

 Score = 18.2 bits (35), Expect = 9.3
 Identities = 6/21 (28%), Positives = 11/21 (52%)
 Frame = -3

Query: 63 RRRFSPSNMEACDSLPARPSC 1
          RR+     ++ C ++  RP C
Sbjct: 33 RRKCQECRLKKCLTVGMRPEC 53


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,987
Number of Sequences: 438
Number of extensions: 315
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 14
effective length of database: 140,211
effective search space used:  2523798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)