Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_M12
         (536 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00065-1|AAK68287.1|  400|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z68298-7|CAA92604.1|  447|Caenorhabditis elegans Hypothetical pr...    28   3.7  
U41990-3|AAY44010.1|  291|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z50016-2|CAC42346.1|  487|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z50016-1|CAA90318.1| 1106|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AF151640-1|AAD42382.1|  487|Caenorhabditis elegans ionotropic GA...    28   4.9  
Z81515-4|CAB04196.1|  739|Caenorhabditis elegans Hypothetical pr...    27   6.5  
AL117195-25|CAB55036.1| 1048|Caenorhabditis elegans Hypothetical...    27   8.6  

>U00065-1|AAK68287.1|  400|Caenorhabditis elegans Hypothetical
           protein D1044.7 protein.
          Length = 400

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 178 NSPQPIRCVATTTLNTSYNRHISKLQKNIYC 86
           N+ QPI C+ T   NTS+ ++ S  Q+ + C
Sbjct: 369 NNNQPINCLVTVCPNTSFCQYSSSGQRYVCC 399


>Z68298-7|CAA92604.1|  447|Caenorhabditis elegans Hypothetical
           protein F44D12.8 protein.
          Length = 447

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = -2

Query: 190 LSTTNSPQPIRCVATTTLNTSYNRHISKLQKNIYCI 83
           + TT    P++ ++T T++T+  + IS   KN+ C+
Sbjct: 375 IETTMPLPPVKALSTDTISTTPGKAISFHMKNVVCL 410


>U41990-3|AAY44010.1|  291|Caenorhabditis elegans Hypothetical
           protein F52B10.2 protein.
          Length = 291

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 127 MKYSELLWQHSVSVVDCLLYLNVKIKRLYSSLLVGV 234
           MKY  LL  H + ++ C +  N   KR   +++VGV
Sbjct: 1   MKYRLLLILHLIDLISCGVIPNTSKKRFPDAIIVGV 36


>Z50016-2|CAC42346.1|  487|Caenorhabditis elegans Hypothetical
           protein T21C12.1b protein.
          Length = 487

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 9/34 (26%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = +2

Query: 368 LCFFYVLINDTCIYLIKMY--TLFLIVIKYMEYW 463
           LC+F++   +   Y+I++Y  ++ ++VI ++ +W
Sbjct: 237 LCWFFLFKRNIGFYIIQIYLPSVLIVVISWVSFW 270


>Z50016-1|CAA90318.1| 1106|Caenorhabditis elegans Hypothetical
           protein T21C12.1a protein.
          Length = 1106

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 9/34 (26%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = +2

Query: 368 LCFFYVLINDTCIYLIKMY--TLFLIVIKYMEYW 463
           LC+F++   +   Y+I++Y  ++ ++VI ++ +W
Sbjct: 249 LCWFFLFKRNIGFYIIQIYLPSVLIVVISWVSFW 282


>AF151640-1|AAD42382.1|  487|Caenorhabditis elegans ionotropic GABA
           receptor subunitUNC-49A protein.
          Length = 487

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 9/34 (26%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = +2

Query: 368 LCFFYVLINDTCIYLIKMY--TLFLIVIKYMEYW 463
           LC+F++   +   Y+I++Y  ++ ++VI ++ +W
Sbjct: 237 LCWFFLFKRNIGFYIIQIYLPSVLIVVISWVSFW 270


>Z81515-4|CAB04196.1|  739|Caenorhabditis elegans Hypothetical
           protein F26H11.4 protein.
          Length = 739

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/59 (25%), Positives = 30/59 (50%)
 Frame = -2

Query: 286 RLRHTG*DAARFVSRVKTLRRVNSSKVF*FLHLSTTNSPQPIRCVATTTLNTSYNRHIS 110
           RL     +  +F+  + +L  +  + +  F   S+++ P P+R  +T   N SYN++ S
Sbjct: 539 RLTFGATEREQFLRIMHSLGCLLDTAIVKFSQQSSSSQPPPMRRDSTAVFNNSYNQYTS 597


>AL117195-25|CAB55036.1| 1048|Caenorhabditis elegans Hypothetical
           protein Y57A10A.31 protein.
          Length = 1048

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 196 LHLSTTNSPQPIRCVATTTLNTSYNRH 116
           L++  +N+P+ I CV+ T  N S  +H
Sbjct: 339 LYIKYSNTPKHIECVSVTVRNESDKKH 365


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,966,219
Number of Sequences: 27780
Number of extensions: 218184
Number of successful extensions: 443
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)