Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_M11
(518 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyce... 28 0.96
SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p... 27 1.3
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 27 1.7
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 27 2.2
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||... 27 2.2
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc... 26 3.9
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 25 5.1
SPCC1795.03 |gms1||UDP-galactose transporter Gms1|Schizosaccharo... 25 6.8
SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa... 25 6.8
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c... 25 9.0
>SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 27.9 bits (59), Expect = 0.96
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +3
Query: 234 RRGVERDRARQPLVAIGTHVIIQAKNDITIEKTKLELHNRPAVFVSDAKEIILE-NWLQ 407
R E D+ R+ A I + + +E+T EL + A+ + +E+ +E NWL+
Sbjct: 263 RTAAEEDKRRRNTAASARFRIKKKLKEQQLERTAKELTEKVAILETRVRELEMENNWLK 321
>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 608
Score = 27.5 bits (58), Expect = 1.3
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Frame = +3
Query: 267 PLVAIGTHVIIQAKNDITIEKTKLELHNRPAVFVSDA-KEIILEN---WLQMNNYQTFAS 434
P V + + ND+ IEK E+ N F +A KEII +N WL+ Y+
Sbjct: 549 PTVNVADDMKDGTNNDVEIEKNSTEIDN--ITFNDEADKEIIEQNRRKWLKSKGYKVAKK 606
Query: 435 K 437
K
Sbjct: 607 K 607
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 27.1 bits (57), Expect = 1.7
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -1
Query: 263 PSTVSFNASPTPNASSWSNLLCTISWISPSTKDAPPAARSVNTVN 129
PST+ FN SP+P A S+ + S K A +++N VN
Sbjct: 320 PSTLQFNPSPSPAAPSYPP-------VDASVKQAADLDQAINFVN 357
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 26.6 bits (56), Expect = 2.2
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 23 KRVLNKRPQWNVLEEPV 73
K VLNK+ QW+ LE P+
Sbjct: 563 KAVLNKQSQWHDLENPI 579
>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 992
Score = 26.6 bits (56), Expect = 2.2
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +1
Query: 58 PGRTRCGEYYPVVNEIYIENDDQRFTVLTDRAAGGASLVEGEIQ 189
P R PV N + I + D +L D+A AS+ E Q
Sbjct: 298 PSRFPTNSNVPVGNSMSIRDTDSPLNILVDKAKAKASIKENASQ 341
>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 430
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -1
Query: 101 SLTTG*YSPQRVLPGHSTEVF 39
+LTTG PQ VL GH+ E F
Sbjct: 166 ALTTGEALPQAVLKGHTAEGF 186
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 5.1
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -2
Query: 280 IATKGCRARSRSTPLLLQMRRRGAISYAPS 191
+ KGC S P+L + R+G+ +AP+
Sbjct: 123 VLDKGCHPESIENPVLSFITRKGSSRHAPN 152
>SPCC1795.03 |gms1||UDP-galactose transporter
Gms1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 353
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 12 EAILRGSLIKDLSGMSWKNPLRGILSSCQ*NI 107
EA LR L + G SWK + L +CQ N+
Sbjct: 80 EAKLRAFLPQIFGGDSWKLAIPAFLYTCQNNL 111
>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 589
Score = 25.0 bits (52), Expect = 6.8
Identities = 25/70 (35%), Positives = 33/70 (47%)
Frame = +3
Query: 270 LVAIGTHVIIQAKNDITIEKTKLELHNRPAVFVSDAKEIILENWLQMNNYQTFASKTLPD 449
LVAIGTH + T E K E N V ++ +EI N L+ Y+ SK L
Sbjct: 143 LVAIGTHDFSVMEGPFTYEALKPEEIN--FVPLNQTQEINGSNLLEF--YKD--SKHLSR 196
Query: 450 GLHLLTLEPR 479
LH++ PR
Sbjct: 197 YLHIIANSPR 206
>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 596
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -3
Query: 108 IYFIDNWIIFPATGSSRTFH*G 43
+ + NWI P TG++RT G
Sbjct: 87 VVYEKNWIFVPYTGANRTLRAG 108
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,985,659
Number of Sequences: 5004
Number of extensions: 38987
Number of successful extensions: 119
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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