Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_M11
(518 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_05_0014 + 18392622-18392834,18393064-18393147,18393709-183937... 81 5e-16
10_01_0232 + 2456449-2456652,2456814-2456897,2459113-2459201,245... 67 9e-12
06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850 45 4e-05
05_07_0238 + 28597399-28598286 30 1.3
03_02_0955 - 12690405-12690842,12690940-12691130,12691208-126917... 29 3.0
02_02_0066 - 6501250-6501273,6502018-6502102,6502926-6503110 28 5.2
02_04_0620 - 24491055-24491710,24491794-24491986,24492165-244939... 27 6.8
01_06_0360 - 28729006-28729446,28729810-28730258,28730499-28731480 27 6.8
01_06_1422 + 37234720-37235208 27 9.0
>11_05_0014 +
18392622-18392834,18393064-18393147,18393709-18393797,
18393889-18394063,18394370-18394489,18394591-18394677,
18394755-18394826,18395166-18395279,18395387-18395487,
18395576-18395669,18395794-18395961,18396287-18396352,
18396475-18396531,18396708-18396927,18397015-18397151,
18397573-18397641,18397722-18397781,18397927-18397998,
18398171-18398218,18398376-18398495,18398743-18398808,
18399341-18399453,18399821-18399905,18400246-18400356,
18400436-18400531,18401075-18401143,18401235-18401453
Length = 974
Score = 81.0 bits (191), Expect = 5e-16
Identities = 35/60 (58%), Positives = 46/60 (76%)
Frame = +1
Query: 76 GEYYPVVNEIYIENDDQRFTVLTDRAAGGASLVEGEIQLMVHRRLLHDDAFGVGEALNET 255
G YYPV IY+E+ + ++L DR+ GGAS+ +G+I+LM+HRRLLHDD GV EALNET
Sbjct: 740 GNYYPVNLGIYVEDGSRELSILVDRSVGGASIKDGQIELMLHRRLLHDDGRGVAEALNET 799
>10_01_0232 +
2456449-2456652,2456814-2456897,2459113-2459201,
2459245-2459452,2459764-2459883,2460004-2460087,
2460171-2460242,2460342-2460455,2460852-2460952,
2461024-2461117,2461265-2461432,2461539-2461616,
2461908-2461973,2462052-2462108,2462353-2462572,
2462867-2463003,2465379-2465450,2465530-2465577,
2465681-2465806,2465982-2466047,2466508-2466620,
2467348-2467432,2467885-2467980,2468067-2468114,
2468190-2468258,2468393-2468581
Length = 935
Score = 66.9 bits (156), Expect = 9e-12
Identities = 30/61 (49%), Positives = 40/61 (65%)
Frame = +1
Query: 76 GEYYPVVNEIYIENDDQRFTVLTDRAAGGASLVEGEIQLMVHRRLLHDDAFGVGEALNET 255
G YYPV IY+ + +VL D A G +S+ +G+I++M+HRRL DD GVGE LNE
Sbjct: 732 GNYYPVNQGIYVADGKYELSVLVDHAVGASSIQDGQIEVMLHRRLSADDGRGVGEPLNEV 791
Query: 256 V 258
V
Sbjct: 792 V 792
>06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850
Length = 1173
Score = 44.8 bits (101), Expect = 4e-05
Identities = 20/58 (34%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Frame = +1
Query: 76 GEYYPVVNEIYIEND-DQRFTVLTDRAAGGASLVEGEIQLMVHRRLLHDDAFGVGEAL 246
G YYP+ + ++++ RF+V + ++ G ASL G +++M+ RRL DD G+G+ +
Sbjct: 920 GNYYPMPSLAFLQDSLGNRFSVHSKQSLGAASLKNGWLEIMLDRRLTQDDGRGLGQGV 977
>05_07_0238 + 28597399-28598286
Length = 295
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/44 (36%), Positives = 28/44 (63%)
Frame = -1
Query: 260 STVSFNASPTPNASSWSNLLCTISWISPSTKDAPPAARSVNTVN 129
STV+ + S +P++SS ++ CT+S +PS++ A P A + N
Sbjct: 33 STVTTSPS-SPSSSSTGSVDCTLSLGTPSSRRAEPVAAAAPAAN 75
>03_02_0955 -
12690405-12690842,12690940-12691130,12691208-12691718,
12692240-12693171,12693260-12693351,12693430-12693509,
12693568-12693621,12693734-12693850,12693949-12694194,
12694273-12694432,12694512-12694576,12694686-12694877,
12694980-12695061,12695153-12695925
Length = 1310
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -1
Query: 266 LPSTVSFNASPTPNASSWSNLLCTISWISPS 174
LP+ ++ + SPT A++ S LL SW SP+
Sbjct: 70 LPAVLALSPSPTAAAAALSALLSAPSWPSPT 100
>02_02_0066 - 6501250-6501273,6502018-6502102,6502926-6503110
Length = 97
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = -1
Query: 242 ASPTPNASSWS---NLLCTISWISPSTKDAPPAARSVNTVNL 126
+ P P AS WS LC + WI+P +AP + + V++
Sbjct: 54 SQPPPPASRWSLISTFLCLLKWIAP--LEAPHQIQRIEQVDI 93
>02_04_0620 -
24491055-24491710,24491794-24491986,24492165-24493991,
24494245-24494304,24494808-24494916,24496393-24496522,
24498740-24498848
Length = 1027
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -1
Query: 260 STVSFNASPTPNASSWSNLLCTISWISPSTKDAPPAAR 147
ST S NA +S+ + C++SW +++ A P R
Sbjct: 803 STTSKNAKAVSRSSAIEAVACSLSWDDTTSESALPGTR 840
>01_06_0360 - 28729006-28729446,28729810-28730258,28730499-28731480
Length = 623
Score = 27.5 bits (58), Expect = 6.8
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 236 PTPNASSWSNLLCTISWISPSTK 168
PT S W CT SW+S ++K
Sbjct: 478 PTMKTSDWYTKSCTYSWVSLNSK 500
>01_06_1422 + 37234720-37235208
Length = 162
Score = 27.1 bits (57), Expect = 9.0
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -2
Query: 298 IITCVPIATKGCRARSRSTPLLLQMRRRGAISYAPSAGSR 179
+ TC AT G R R+ STP + RG ++ P SR
Sbjct: 5 VATCFVPATSGVRCRAFSTP-ITNYSARGVVADPPKLLSR 43
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,904,530
Number of Sequences: 37544
Number of extensions: 253021
Number of successful extensions: 683
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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