Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_M11
         (518 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40948-5|AAA81731.2|  955|Caenorhabditis elegans Hypothetical pr...    62   2e-10
Z75954-6|CAJ55257.1| 1145|Caenorhabditis elegans Hypothetical pr...    46   2e-05
Z75954-5|CAB00104.1| 1143|Caenorhabditis elegans Hypothetical pr...    46   2e-05
U97015-6|AAB52345.2| 1064|Caenorhabditis elegans Hypothetical pr...    33   0.093
Z82075-3|CAB04929.2|  784|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AF293972-1|AAG02478.1|  784|Caenorhabditis elegans auxilin protein.    29   2.0  
Z92786-2|CAB07211.1|  518|Caenorhabditis elegans Hypothetical pr...    28   3.5  
AF016670-7|AAB66102.3|  361|Caenorhabditis elegans Hypothetical ...    27   6.1  

>U40948-5|AAA81731.2|  955|Caenorhabditis elegans Hypothetical
           protein F55D10.1 protein.
          Length = 955

 Score = 62.1 bits (144), Expect = 2e-10
 Identities = 27/59 (45%), Positives = 44/59 (74%)
 Frame = +1

Query: 76  GEYYPVVNEIYIENDDQRFTVLTDRAAGGASLVEGEIQLMVHRRLLHDDAFGVGEALNE 252
           G YYP+ +  YI++++ +F+V+TDRA G  +  +G +++M+HRR  +DD FGV EAL+E
Sbjct: 740 GNYYPITSFGYIKDENAQFSVITDRAQGMVAS-DGVVEIMLHRRCFYDDHFGVEEALDE 797


>Z75954-6|CAJ55257.1| 1145|Caenorhabditis elegans Hypothetical protein
            F58H1.1b protein.
          Length = 1145

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 20/57 (35%), Positives = 37/57 (64%)
 Frame = +1

Query: 82   YYPVVNEIYIENDDQRFTVLTDRAAGGASLVEGEIQLMVHRRLLHDDAFGVGEALNE 252
            +YP+   +YIE+D  R ++ + +A G +SL  G+I++M+ RRL  DD  G+ + + +
Sbjct: 920  FYPMSAGVYIEDDTTRMSIHSAQALGVSSLSSGQIEIMLDRRLSSDDNRGLQQGVRD 976


>Z75954-5|CAB00104.1| 1143|Caenorhabditis elegans Hypothetical protein
            F58H1.1a protein.
          Length = 1143

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 20/57 (35%), Positives = 37/57 (64%)
 Frame = +1

Query: 82   YYPVVNEIYIENDDQRFTVLTDRAAGGASLVEGEIQLMVHRRLLHDDAFGVGEALNE 252
            +YP+   +YIE+D  R ++ + +A G +SL  G+I++M+ RRL  DD  G+ + + +
Sbjct: 918  FYPMSAGVYIEDDTTRMSIHSAQALGVSSLSSGQIEIMLDRRLSSDDNRGLQQGVRD 974


>U97015-6|AAB52345.2| 1064|Caenorhabditis elegans Hypothetical
           protein F48C1.1 protein.
          Length = 1064

 Score = 33.5 bits (73), Expect = 0.093
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = +1

Query: 82  YYPVVNEIYIENDDQRFTVLTDRAAGGASLVEGEIQLMVHRRLLHDDAFGVG 237
           YYP+     +++  QR +++++   G   L  G +++ + R L  DD  G+G
Sbjct: 844 YYPMPTAAVLQSGKQRLSIVSNVEHGARFLESGTVEINIDRILNQDDGKGLG 895


>Z82075-3|CAB04929.2|  784|Caenorhabditis elegans Hypothetical
           protein W07A8.3 protein.
          Length = 784

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -1

Query: 260 STVSFNASPTPNASSWSN--LLCTISWISPSTKDAPPAARSVNTVN 129
           S+ S  ++ +P  SSWSN  LL   S + P T   PP  R+ +  N
Sbjct: 544 SSASNLSTASPATSSWSNTDLLGGFSPMKPQTTSTPPNTRNPSASN 589


>AF293972-1|AAG02478.1|  784|Caenorhabditis elegans auxilin protein.
          Length = 784

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -1

Query: 260 STVSFNASPTPNASSWSN--LLCTISWISPSTKDAPPAARSVNTVN 129
           S+ S  ++ +P  SSWSN  LL   S + P T   PP  R+ +  N
Sbjct: 544 SSASNLSTASPATSSWSNTDLLGGFSPMKPQTTSTPPNTRNPSASN 589


>Z92786-2|CAB07211.1|  518|Caenorhabditis elegans Hypothetical
           protein F47H4.4 protein.
          Length = 518

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 306 KNDITIEKTKLELHNRPAVFVSDAKEIILEN 398
           K +I +EK  L+++N  +V   D KE+I +N
Sbjct: 261 KLNIGVEKISLKIYNTTSVLQFDEKEVIYQN 291


>AF016670-7|AAB66102.3|  361|Caenorhabditis elegans Hypothetical
           protein K02F6.2 protein.
          Length = 361

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = +3

Query: 279 IGTHVIIQAKNDITIEKTKLELHNRPAVFVSDAKEIILENWLQMNNYQTFASK 437
           IG H+I+    D+  +K     HN   + VS  + I      ++N+Y+    K
Sbjct: 258 IGPHIIVTPSEDLLWKKCDFVFHNNRFLIVSPTELIEFLFEFKINHYKITGKK 310


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,118,758
Number of Sequences: 27780
Number of extensions: 224066
Number of successful extensions: 597
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)