Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_M10
         (564 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.05c |spf31||DNAJ protein Spf31|Schizosaccharomyces pomb...    27   2.5  
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi...    26   3.3  
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    26   4.4  
SPAC926.02 |||conserved fungal protein|Schizosaccharomyces pombe...    26   4.4  
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    25   5.8  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    25   5.8  

>SPBC1734.05c |spf31||DNAJ protein Spf31|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 209

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +3

Query: 360 KTNEDKLIQVRLDLSQQEKVAWEETKMYR---WQDFQDFSLRRMFKK 491
           +  +D++ + R    + EKV WEET+  R   WQDF   + +   KK
Sbjct: 155 QARQDEIARERKRRVESEKV-WEETRDNRVGNWQDFLHKTKKNNLKK 200


>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 327 KKPCSSLNPSPYPAAVCTPC 268
           K+ C S +P P+PA +CT C
Sbjct: 206 KEKCPSGHP-PWPAGICTKC 224


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 339 SYTSNITKTNEDKLIQVRLDLSQQEKVAWEETKMY 443
           S    IT    + L++   +LS+Q+ V W ++K+Y
Sbjct: 579 SLDGRITSVTLETLVEKYSELSKQQIVEWFKSKLY 613


>SPAC926.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 443

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 9/35 (25%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
 Frame = +3

Query: 393 LDLSQQEKVAWEET----KMYRWQDFQDFSLRRMF 485
           +DL ++E++ WE T       ++++  D   RR++
Sbjct: 157 IDLQERERIEWENTIQTSSQQKYEEIPDIQARRLY 191


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -1

Query: 312 SLNPSPYPAAVCTPCLRVPAP 250
           S NP P+   VC P    P P
Sbjct: 579 STNPPPFDGDVCPPACNTPPP 599


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = +3

Query: 243  DLEALEHEGREYILQ---LDKAMGLRKNRASLAEWSYTSNITKTNEDK 377
            DLE L+HE  ++++Q   L+KA+   +      E   T NI    E K
Sbjct: 1324 DLEKLQHEHDDWLIQRGDLEKALKDSEKNFLRKEAEMTENIHSLEEGK 1371


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,220,877
Number of Sequences: 5004
Number of extensions: 43230
Number of successful extensions: 130
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)