Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_M10
(564 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0323 - 14364145-14365656 33 0.16
03_05_0543 - 25404630-25405408,25405461-25405605 33 0.21
04_01_0237 + 3072799-3073245 30 1.5
04_03_0369 + 15012906-15014417 29 1.9
01_03_0051 - 11985456-11985803 29 1.9
12_02_0063 + 13098519-13099585,13099759-13099906 29 2.6
01_06_0781 + 31962661-31963089,31963174-31963228,31964310-319645... 29 3.4
07_03_0953 + 22860954-22861262 28 4.5
04_04_0304 + 24271979-24272345,24273315-24273353,24273930-242740... 28 4.5
04_04_0999 - 30002433-30003279,30003384-30003513,30003620-30003758 28 5.9
02_02_0580 + 11757667-11758258,11758419-11758572,11758682-117587... 28 5.9
>04_03_0323 - 14364145-14365656
Length = 503
Score = 33.1 bits (72), Expect = 0.16
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = -2
Query: 275 LPAFVFQRLQIGVPALSGDHEDS 207
+P FVF + G+PA+SG+HED+
Sbjct: 63 VPGFVFAAIPDGLPAMSGEHEDA 85
>03_05_0543 - 25404630-25405408,25405461-25405605
Length = 307
Score = 32.7 bits (71), Expect = 0.21
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = -1
Query: 333 LPKKPCSSLNPSPYPAAVCTPCLRVPAPPDRGP 235
LPKK S L PSP P+ V P + P P R P
Sbjct: 109 LPKKTPSPLTPSPTPSPVTPPPQQPPQPEPRRP 141
>04_01_0237 + 3072799-3073245
Length = 148
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +1
Query: 409 KRKWLGRRRKCTDGK-ISKTSHSGGCSRNTVNWACPRYLMT 528
+R+WL RRR + +S S SGGC W+ ++ T
Sbjct: 15 RRRWLKRRRSGACSRALSAWSRSGGCDAQNRRWSKEKWFGT 55
>04_03_0369 + 15012906-15014417
Length = 503
Score = 29.5 bits (63), Expect = 1.9
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -2
Query: 275 LPAFVFQRLQIGVPALSGDHEDS 207
+P FVF + G+PA+SG+ ED+
Sbjct: 63 VPGFVFAAIPDGLPAMSGEDEDA 85
>01_03_0051 - 11985456-11985803
Length = 115
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 409 KRKWLGRRRKCTDGKISKT-SHSGGCSRNTVNWACPRYLMT 528
+R+WL RRR + S S SGGC W+ ++ T
Sbjct: 15 RRRWLKRRRTGACSRASSAWSRSGGCDAQNGRWSKEKWFGT 55
>12_02_0063 + 13098519-13099585,13099759-13099906
Length = 404
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -1
Query: 321 PCSSLNPSPYPAAVCTPCLRVPAPPDRGP 235
P L P PYPAA P + PAPP + P
Sbjct: 177 PPQELAPPPYPAAQAAP--QAPAPPRQVP 203
>01_06_0781 +
31962661-31963089,31963174-31963228,31964310-31964557,
31965080-31965281,31965793-31965912,31965976-31966100,
31966182-31966288,31966726-31966792
Length = 450
Score = 28.7 bits (61), Expect = 3.4
Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Frame = -1
Query: 435 SSPPKP-LSLAGISRGGLESIYPHXXXXXXXXXSILPKKPCSSLNPSPYPAAVCTPCLRV 259
S+PP P L+ R L S YP P + +PSP A P +
Sbjct: 60 SAPPSPPLAEDPAGRRTLASPYPSPGLPPLPSRR--SSSPFAISSPSPLRPAAAMPPADL 117
Query: 258 PAPPDRGP 235
P PP RGP
Sbjct: 118 PRPPRRGP 125
>07_03_0953 + 22860954-22861262
Length = 102
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 409 KRKWLGRRRKCTDGKISKT-SHSGGCSRNTVNWACPRYLMT 528
+++WL RRR + S S SGGC W+ ++ T
Sbjct: 15 RQRWLKRRRSGACSRASSAWSRSGGCDTQNGRWSKEKWFGT 55
>04_04_0304 +
24271979-24272345,24273315-24273353,24273930-24274058,
24274516-24274743,24275621-24275826
Length = 322
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = +3
Query: 372 DKLIQVRLDLSQQEKVAWEETKMYRWQDFQDFSLRR---MFKKYSELGVSALPDD 527
D + ++L + + ++V E+ Y +DF+DF RR + ++YS ++ DD
Sbjct: 253 DTGMTIKLYMFENDEVRTEDKTFYTEEDFRDFLSRRGWTLLREYSGYRIADTLDD 307
>04_04_0999 - 30002433-30003279,30003384-30003513,30003620-30003758
Length = 371
Score = 27.9 bits (59), Expect = 5.9
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = -1
Query: 330 PKKPCSSLNPSPYPAAVCTPCLRVPAPPDRGPGL 229
P PCSS +PS A V P L +P D GP L
Sbjct: 217 PTSPCSSTSPSCARAGV-DPLLDLPEIVDLGPEL 249
>02_02_0580 +
11757667-11758258,11758419-11758572,11758682-11758756,
11758836-11758980,11759222-11759287,11759347-11759500,
11761506-11761624
Length = 434
Score = 27.9 bits (59), Expect = 5.9
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Frame = -3
Query: 496 LYFLNILLSE--KSWKSCHRYIFVSSQATFSCWDK-SRRT*INLSSFVFVI 353
L+ + IL ++WKSC R V+ A CW+ S +T I +++F+ V+
Sbjct: 352 LFLVEILRDRALEAWKSCPRKKLVAGTAVTMCWNMFSVKTRI-IAAFISVV 401
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,972,955
Number of Sequences: 37544
Number of extensions: 308600
Number of successful extensions: 931
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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