Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_M10
         (564 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL022716-5|CAB97232.1|  291|Caenorhabditis elegans Hypothetical ...    29   2.3  
Z68215-7|CAA92453.1|  289|Caenorhabditis elegans Hypothetical pr...    28   4.0  
M18540-1|AAA28078.1|  640|Caenorhabditis elegans protein ( C.ele...    28   4.0  
U42437-5|AAA83499.1|  302|Caenorhabditis elegans Dumpy : shorter...    28   5.3  
U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (gr...    28   5.3  
M23559-1|AAA27994.1|  302|Caenorhabditis elegans protein ( C.ele...    28   5.3  
U80837-4|AAB37905.1|  504|Caenorhabditis elegans Hypothetical pr...    27   7.0  
AC024136-6|AAF35965.3|  425|Caenorhabditis elegans Hypothetical ...    27   7.0  
U53333-6|AAA96159.2|  304|Caenorhabditis elegans Collagen protei...    27   9.3  
U42848-1|AAA83606.2|  345|Caenorhabditis elegans Hypothetical pr...    27   9.3  
U23484-3|AAK68298.1|  126|Caenorhabditis elegans Sr protein (spl...    27   9.3  
U23484-2|AAC46767.1|  196|Caenorhabditis elegans Sr protein (spl...    27   9.3  

>AL022716-5|CAB97232.1|  291|Caenorhabditis elegans Hypothetical
           protein C24F3.6 protein.
          Length = 291

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = -1

Query: 330 PKKPCSSLNPSPYPAAVCTPCLRVPAPPDRGPG 232
           PK+PC  L P P     C PC   P  P   PG
Sbjct: 125 PKEPCEPLTPPP-----CKPCPEGPPGPAGPPG 152


>Z68215-7|CAA92453.1|  289|Caenorhabditis elegans Hypothetical
           protein C53B4.5 protein.
          Length = 289

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -1

Query: 330 PKKPCSSLNPSPYPAAVCTPCLRVPAPPDRGPG 232
           PK+PC  + P P     C PC   P  P   PG
Sbjct: 123 PKEPCEPITPPP-----CKPCPEGPPGPAGPPG 150


>M18540-1|AAA28078.1|  640|Caenorhabditis elegans protein (
           C.elegans heat shockprotein 70A gene, complete cds. ).
          Length = 640

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 25/102 (24%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
 Frame = +3

Query: 243 DLEALEHEGREYILQLDKAMGLRKNRASLAEWSYTSNITKTNEDKLIQVRLDLSQQEKVA 422
           D+E + +E  +Y    D+A   R    +  E SY  N+ +T ED+ ++ ++    ++K+ 
Sbjct: 515 DIERMVNEAEKYKAD-DEAQKDRIGAKNGLE-SYAFNLKQTIEDEKLKDKISPEDKKKIE 572

Query: 423 WEETKMYRWQDFQDFSLRRMFK-KYSELGVSALPD--DXYQS 539
            +  ++ +W D    + +  F+ +  +L   A PD    YQS
Sbjct: 573 DKCDEILKWLDSNQTAEKEEFESQQKDLEGLAKPDLSKLYQS 614


>U42437-5|AAA83499.1|  302|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 13 protein.
          Length = 302

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = -1

Query: 330 PKKPCSSLNPSPYPAAVCTPCLRVPAPPDRGPGL 229
           P+KPC  + P P     C PC   P  P   PGL
Sbjct: 136 PQKPCEEITPPP-----CKPC---PQGPPGAPGL 161


>U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (grd
           related) protein 6 protein.
          Length = 240

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 330 PKKPCSSLNPSPYPAAVCTPCLRVPA 253
           P+ PC++  P P P  VC P    PA
Sbjct: 37  PRMPCAAPMPMPMPMPVCPPPPPCPA 62


>M23559-1|AAA27994.1|  302|Caenorhabditis elegans protein (
           C.elegans collagen (dpy-13) gene, complete cds. ).
          Length = 302

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = -1

Query: 330 PKKPCSSLNPSPYPAAVCTPCLRVPAPPDRGPGL 229
           P+KPC  + P P     C PC   P  P   PGL
Sbjct: 136 PQKPCEEITPPP-----CKPC---PQGPPGAPGL 161


>U80837-4|AAB37905.1|  504|Caenorhabditis elegans Hypothetical
           protein F07E5.6 protein.
          Length = 504

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 306 NPSPYPAAVCTPCLRVPAPPD 244
           NP+  PAAV +P  + PAPP+
Sbjct: 256 NPTQMPAAVDSPAPQSPAPPN 276


>AC024136-6|AAF35965.3|  425|Caenorhabditis elegans Hypothetical
           protein F54A3.1 protein.
          Length = 425

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 330 PKKPCSSLNPSPYPAAVCTPCLRVPAP 250
           PK+P S++ P   P A   P  R P+P
Sbjct: 233 PKRPSSAVAPRRAPPASAAPTRRAPSP 259


>U53333-6|AAA96159.2|  304|Caenorhabditis elegans Collagen protein
           33 protein.
          Length = 304

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -1

Query: 330 PKKPCSSLNPSPYPAAVCTPCLRVPAPPDRGPG 232
           P +PC  + P P     C PC   PA P   PG
Sbjct: 138 PVQPCEPITPPP-----CKPCPDGPAGPPGPPG 165


>U42848-1|AAA83606.2|  345|Caenorhabditis elegans Hypothetical
           protein C31H1.2 protein.
          Length = 345

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 305 FKEEQGFFGRMELHVEYYEDE 367
           F+EEQ FF R+    EYY+++
Sbjct: 255 FEEEQEFFRRLRYEKEYYKNQ 275


>U23484-3|AAK68298.1|  126|Caenorhabditis elegans Sr protein
           (splicing factor) protein4, isoform b protein.
          Length = 126

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 471 LRRMFKKYSELGVSALPDDXYQSMMRG 551
           LRR F++Y ++G   +P D Y    +G
Sbjct: 35  LRRTFERYGDIGDVHIPRDKYSRQSKG 61


>U23484-2|AAC46767.1|  196|Caenorhabditis elegans Sr protein
           (splicing factor) protein4, isoform a protein.
          Length = 196

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 471 LRRMFKKYSELGVSALPDDXYQSMMRG 551
           LRR F++Y ++G   +P D Y    +G
Sbjct: 35  LRRTFERYGDIGDVHIPRDKYSRQSKG 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,293,718
Number of Sequences: 27780
Number of extensions: 245255
Number of successful extensions: 684
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)