Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_M09
(223 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy... 25 1.8
SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|... 25 1.8
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy... 24 3.1
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 24 3.1
SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces... 23 4.1
SPCC320.14 ||SPCC330.15c|threo-3-hydroxyaspartate ammonia-lyase ... 23 4.1
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 23 5.5
SPBC18H10.15 |ppk23||serine/threonine protein kinase Ppk23|Schiz... 23 7.2
SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory... 23 7.2
SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase |Schizosaccha... 23 7.2
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p... 22 9.5
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 22 9.5
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi... 22 9.5
>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 754
Score = 24.6 bits (51), Expect = 1.8
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -1
Query: 85 EKVTNIVFAWRK*NKPSPNSS 23
EKVT FA+ K N P P SS
Sbjct: 121 EKVTEAWFAYAKKNLPEPPSS 141
>SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 348
Score = 24.6 bits (51), Expect = 1.8
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -3
Query: 215 PAEDRPSDIFIWWRKTTFLLSRPEY 141
P +D P + + TTFL++ P Y
Sbjct: 124 PEKDLPGECIYGHKATTFLINAPHY 148
>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 543
Score = 23.8 bits (49), Expect = 3.1
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +1
Query: 106 IVGDDKKLIILGYSGRDKRNVVFLHQMNMSLG 201
+ DDK L+ LGY KR L S G
Sbjct: 27 VTEDDKMLLNLGYKQEFKREFSLLAVFGQSFG 58
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 23.8 bits (49), Expect = 3.1
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = -3
Query: 158 LSRPEYPKIINF 123
LS+PE PK++NF
Sbjct: 264 LSKPEKPKVLNF 275
>SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 129
Score = 23.4 bits (48), Expect = 4.1
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 164 FLLSRPEYPKIINFLSSPTITGPFFGR 84
F L + YP II+FL + GP+ R
Sbjct: 94 FNLFKVFYPLIISFLRTVPYIGPYIDR 120
>SPCC320.14 ||SPCC330.15c|threo-3-hydroxyaspartate ammonia-lyase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 323
Score = 23.4 bits (48), Expect = 4.1
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = -1
Query: 214 QRKTGQVTYSSG--GGKLRFSCPVLNIP 137
QRK G +T+SSG + S +L IP
Sbjct: 72 QRKAGVLTFSSGNHAQAIALSAKILGIP 99
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 23.0 bits (47), Expect = 5.5
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = +3
Query: 192 VTWPVFRWS 218
V WP+F+WS
Sbjct: 308 VIWPIFKWS 316
>SPBC18H10.15 |ppk23||serine/threonine protein kinase
Ppk23|Schizosaccharomyces pombe|chr 2|||Manual
Length = 398
Score = 22.6 bits (46), Expect = 7.2
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -3
Query: 191 IFIWWRKTTFLLSRPEYPKIINFLS 117
+ +W+R LL P Y K I+ S
Sbjct: 235 VTLWYRAPELLLGAPSYGKEIDMWS 259
>SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory
subunit Dfp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 545
Score = 22.6 bits (46), Expect = 7.2
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = +3
Query: 174 PPPDEYVTWPVFR 212
P PD V WP FR
Sbjct: 302 PLPDRDVPWPTFR 314
>SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 363
Score = 22.6 bits (46), Expect = 7.2
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = -1
Query: 181 GGGKLRFSCPVL 146
GGG++ F CPV+
Sbjct: 162 GGGEVNFLCPVI 173
>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1028
Score = 22.2 bits (45), Expect = 9.5
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -1
Query: 64 FAWRK*NKPSPNSSAR 17
FA K N PSPNS R
Sbjct: 40 FACDKQNTPSPNSECR 55
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 22.2 bits (45), Expect = 9.5
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = -1
Query: 223 SLLQRKTGQVTYSSGGGKLRFSCPVLNIPK*STFYR 116
SLL++K + + G L + P++N+ F+R
Sbjct: 35 SLLKKKIRKTEFRIDNGLLGNTSPIINVESKIPFHR 70
>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 22.2 bits (45), Expect = 9.5
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 103 VIVGDDKKLIILGYSGRDKRNVV 171
V +G DKKL I + D NV+
Sbjct: 784 VTIGSDKKLSIADWCIADPANVI 806
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,064,162
Number of Sequences: 5004
Number of extensions: 19662
Number of successful extensions: 47
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 53
effective length of database: 2,097,266
effective search space used: 41945320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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