Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_M09
(223 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1135 + 30629401-30629526,30630072-30630365,30630416-30630895 28 1.2
09_04_0430 + 17502387-17503505 27 1.5
11_06_0068 - 19759141-19761180 27 2.7
05_01_0296 - 2303344-2303395,2303732-2304180,2304287-2304355,230... 27 2.7
02_05_0263 - 27257150-27259213 27 2.7
01_05_0649 + 23919910-23920055,23921038-23921301,23921389-23921401 26 3.6
09_04_0156 - 15190502-15190903,15191149-15191154,15191512-15192351 25 6.2
09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817 25 6.2
05_01_0158 - 1067721-1067827,1067951-1068008,1068276-1068334,106... 25 6.2
01_07_0248 + 42261373-42261609,42261733-42261905,42261986-422620... 25 6.2
06_03_1292 - 29064575-29064997 25 8.3
04_04_0878 + 29039110-29039366,29039634-29039822,29039907-290400... 25 8.3
03_06_0650 - 35292062-35292079,35292365-35292955 25 8.3
>03_05_1135 + 30629401-30629526,30630072-30630365,30630416-30630895
Length = 299
Score = 27.9 bits (59), Expect = 1.2
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 73 LLLSLPKKGPVIVGDDKKLIILGYSGRDKRNVVFLHQMNMSL 198
LLL+ P+ + GDD + + L Y+ RD R L Q+ + L
Sbjct: 176 LLLAEPRFARLFFGDDPRYVGLAYAVRDGRAGSGLRQVGVQL 217
>09_04_0430 + 17502387-17503505
Length = 372
Score = 27.5 bits (58), Expect = 1.5
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = -3
Query: 218 TPAEDRPSDIFIWWRKTTFLLSR--PEYPKIINF 123
TPA RP I +R+ +FLL+R P+ P ++F
Sbjct: 82 TPASRRPDAIHAQYRRLSFLLNRSHPDRPCSLSF 115
>11_06_0068 - 19759141-19761180
Length = 679
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 192 HIHLVEENYVSLVPS*ISQNNQLFIVTHY 106
H + +N V LV I QNN L +VT Y
Sbjct: 87 HSQVNHKNVVRLVGYSIEQNNALMVVTEY 115
>05_01_0296 -
2303344-2303395,2303732-2304180,2304287-2304355,
2304539-2306546,2311181-2311425
Length = 940
Score = 26.6 bits (56), Expect = 2.7
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = +1
Query: 22 LMNSARVYFIFAMRKLYLLLSLPKKGPVIVGDDKKLIILGYSGRDKRNVVFLHQMNMSLG 201
L+N VYF+ +R+ Y L G I+ KK LG+ + R + +H + +
Sbjct: 226 LLNPLTVYFVLKVRRKYKLFE--PSGLKIIYRYKKYNYLGFIAGNVRATLNMHLVTFAKN 283
Query: 202 LS 207
L+
Sbjct: 284 LA 285
>02_05_0263 - 27257150-27259213
Length = 687
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +2
Query: 11 WIPG**IRRGFISFSPCENYICYFLS 88
WI G IR GF S EN+I Y S
Sbjct: 356 WIHGFGIRHGFCSDGDVENHILYMYS 381
>01_05_0649 + 23919910-23920055,23921038-23921301,23921389-23921401
Length = 140
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 115 DDKKLIILGYSGRDKRNVVFLHQMNMSLGLSS 210
D++KL +LGY + KRN+ L +S + S
Sbjct: 31 DERKLRLLGYEPQLKRNLSLLSNFAVSFSIVS 62
>09_04_0156 - 15190502-15190903,15191149-15191154,15191512-15192351
Length = 415
Score = 25.4 bits (53), Expect = 6.2
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -3
Query: 194 DIFIWWRKTTFLLSRPEYPKIINFLSSPTITG 99
+I WWR++ ++ P YP + S P G
Sbjct: 62 EITPWWRRSPSAVTPPVYPHVERSPSPPIARG 93
>09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817
Length = 883
Score = 25.4 bits (53), Expect = 6.2
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -3
Query: 125 FLSSPTITGPFFGRESNKYSFRMAKMK*TLA 33
F SPTIT FG + S M +M+ TLA
Sbjct: 320 FTMSPTITRYSFGYDGASSSSAMPRMRTTLA 350
>05_01_0158 -
1067721-1067827,1067951-1068008,1068276-1068334,
1069009-1069087,1069177-1069233,1069531-1069580,
1069805-1069886,1070431-1070487,1070741-1070828,
1071171-1071247,1071325-1071443,1071719-1071950
Length = 354
Score = 25.4 bits (53), Expect = 6.2
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +1
Query: 7 TMDPGLMNSARVYFIFAMRKLYLLLS 84
T DP ++ S+ ++ I +R LY+L+S
Sbjct: 265 TRDPLIVLSSNIFAISGLRSLYVLIS 290
>01_07_0248 +
42261373-42261609,42261733-42261905,42261986-42262058,
42262148-42262282,42262352-42262562,42262886-42263034,
42263169-42263267,42263821-42263989,42264176-42264308,
42264600-42264694,42264774-42264882,42265136-42265295,
42265433-42265594,42265814-42265985,42266254-42266402,
42266914-42266951,42267779-42267839,42267913-42268155,
42268233-42268315,42269521-42269609,42270449-42270495,
42270576-42270656,42270737-42270899,42271077-42271267,
42271691-42271762
Length = 1097
Score = 25.4 bits (53), Expect = 6.2
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -3
Query: 176 RKTTFLLSRPEYPKIINFLS 117
RK T S +YPKI++F+S
Sbjct: 172 RKKTLQNSNDDYPKIVDFIS 191
>06_03_1292 - 29064575-29064997
Length = 140
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 132 YFGIFRTGQEKRSFPPPDEYVTWPVFR 212
YF ++ G+E R F P Y+ P FR
Sbjct: 64 YFAVY-VGEEARRFVVPTGYLREPAFR 89
>04_04_0878 +
29039110-29039366,29039634-29039822,29039907-29040044,
29040786-29041011,29041686-29041878,29041963-29042123
Length = 387
Score = 25.0 bits (52), Expect = 8.3
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = -1
Query: 205 TGQVTYSSGGGKLRFSCPVLNIPK*STFYRHPLSP----XLFLGEKVTNIVF 62
+G+ G G+ R S ++PK S +R LSP L G V + VF
Sbjct: 21 SGRSLLPKGSGRFRRSSARCSLPKGSDRFRRSLSPVNSRSLLEGRDVRDAVF 72
>03_06_0650 - 35292062-35292079,35292365-35292955
Length = 202
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -3
Query: 140 PKIINFLSSPTITGPFFGRESNKYS 66
P ++SSP FF R +N+YS
Sbjct: 46 PYSFGYVSSPPYGATFFHRSTNRYS 70
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,980,339
Number of Sequences: 37544
Number of extensions: 124755
Number of successful extensions: 245
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 14,793,348
effective HSP length: 53
effective length of database: 12,803,516
effective search space used: 256070320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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