Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_M08
         (391 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006680-8|AAK72298.1|  355|Caenorhabditis elegans Serpentine re...    29   1.5  
Z83128-6|CAB05638.2|  353|Caenorhabditis elegans Hypothetical pr...    27   3.6  
U29097-8|AAA68415.1|  341|Caenorhabditis elegans Serpentine rece...    27   3.6  
Z93378-1|CAB07582.1|  303|Caenorhabditis elegans Hypothetical pr...    27   6.2  

>AC006680-8|AAK72298.1|  355|Caenorhabditis elegans Serpentine
           receptor, class t protein6 protein.
          Length = 355

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +1

Query: 232 F*SGSTFVYFLFMLCFYEVLKSNRSVYVGSVQIL 333
           F SG  F+ FL+ LCF  +LK N  V V  + +L
Sbjct: 43  FTSGVIFI-FLYTLCFLAILKLNLRVPVNQLMLL 75


>Z83128-6|CAB05638.2|  353|Caenorhabditis elegans Hypothetical
           protein W01D2.4 protein.
          Length = 353

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 343 LAYVIFERTLRILIDYFLIPHKNR 272
           LAY++F RT+R L+   ++P K R
Sbjct: 289 LAYLVFNRTIRNLVVKMILPKKIR 312


>U29097-8|AAA68415.1|  341|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 28 protein.
          Length = 341

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -2

Query: 150 CFV*VLYQRSFYNEVVDL--PLLILIENYKCFFFSESYCY 37
           C   V+  R+FY+ +V    P  IL ++ +CFF    Y Y
Sbjct: 70  CVTAVIRLRAFYHAIVYASDPCAILFQSSQCFFDGNLYYY 109


>Z93378-1|CAB07582.1|  303|Caenorhabditis elegans Hypothetical
          protein F19H8.2 protein.
          Length = 303

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -2

Query: 87 ILIENYKCFFFSESYCYL 34
          IL  NY CF+FS+S CY+
Sbjct: 26 ILDANY-CFYFSDSACYI 42


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,233,808
Number of Sequences: 27780
Number of extensions: 128456
Number of successful extensions: 270
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)