Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_M08
         (391 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   5.0  
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              21   5.0  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   6.6  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 367 NVLKNDLYLAYVIFE 323
           NVL NDL L +V F+
Sbjct: 385 NVLNNDLNLEHVNFQ 399


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 259 FLFMLCFYEV 288
           F+FM C YEV
Sbjct: 126 FMFMKCMYEV 135


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 163 VTLYVFRISSISTFVL 116
           VT+YV  ISS+S  ++
Sbjct: 40  VTMYVLSISSVSEVLM 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,408
Number of Sequences: 438
Number of extensions: 1390
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9514659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)