Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_M06
(206 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c... 29 0.11
SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans i... 26 0.59
SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces pombe... 24 3.2
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ... 23 5.5
SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|ch... 23 5.5
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ... 23 5.5
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 23 7.3
SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|... 23 7.3
SPBC725.03 |||conserved fungal protein|Schizosaccharomyces pombe... 23 7.3
SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit T... 23 7.3
SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe... 22 9.6
SPAC22A12.02c |mug103||sequence orphan|Schizosaccharomyces pombe... 22 9.6
SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|c... 22 9.6
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 22 9.6
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ... 22 9.6
>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 625
Score = 28.7 bits (61), Expect = 0.11
Identities = 20/53 (37%), Positives = 24/53 (45%)
Frame = +2
Query: 20 LRLENYQLCGCTSVPDGTRTYHRSIFYPPLSGLITPNNGSLVLDTYKIRLNSV 178
L L Y L S PD T T RS+F PP NN +L T ++ L V
Sbjct: 334 LNLIRYILENGQSRPDRTGTGTRSVFAPPQLRFSLRNNTLPLLTTKRVFLRGV 386
>SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 201
Score = 26.2 bits (55), Expect = 0.59
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +2
Query: 74 RTYHRSIFYPPLSGLITPNNGSLVLDTYKIRLNSVQSFAGR 196
+ ++ S+ + GLI+ N G V DT L F GR
Sbjct: 2 KLFYFSLLFTLFFGLISANRGPKVTDTVYFDLQQGDEFLGR 42
>SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 568
Score = 23.8 bits (49), Expect = 3.2
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Frame = -2
Query: 139 ASIIGGYQTGQW--RVKNASVVSSCSI 65
A GGYQ G W ++ + VVS C +
Sbjct: 104 AQCYGGYQFGDWAGQLGDGRVVSLCEL 130
>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 571
Score = 23.0 bits (47), Expect = 5.5
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = +3
Query: 21 SVWKITSCAGVHRCRMEQELTTEAFFT 101
+V + C G RCR+ ++ T F T
Sbjct: 383 TVSALMDCVGCERCRLWGKIQTNGFGT 409
>SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 204
Score = 23.0 bits (47), Expect = 5.5
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -2
Query: 130 IGGYQTGQWRVKNASVVS 77
I G G+W +KNAS+++
Sbjct: 126 IRGRNVGKWLLKNASILA 143
>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
pyridoxine, pyridoxal, and pyridoxamine
Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 526
Score = 23.0 bits (47), Expect = 5.5
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -3
Query: 75 LVPSGTDVHPHNW*FSKRRS 16
L+ S HP NW ++KR S
Sbjct: 63 LISSDHPAHPQNWHWAKRWS 82
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 22.6 bits (46), Expect = 7.3
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 77 TYHRSIFYPPLSGLITPNNGSL 142
TY + + PP S L +PN +L
Sbjct: 260 TYDQKVLMPPASYLSSPNQYTL 281
>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 483
Score = 22.6 bits (46), Expect = 7.3
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +3
Query: 18 SSVWKITSCAGVHRCRMEQELTTEAFFT 101
SS I +CA R + EQE+ F T
Sbjct: 173 SSAGAIVACAAAVRNKEEQEILLRQFHT 200
>SPBC725.03 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 257
Score = 22.6 bits (46), Expect = 7.3
Identities = 7/21 (33%), Positives = 12/21 (57%)
Frame = +1
Query: 22 PFGKLPVVRVYIGAGWNKNLP 84
P + +R ++G GW+K P
Sbjct: 41 PRNRTVAIRGFVGTGWHKPRP 61
>SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit
Tfb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 477
Score = 22.6 bits (46), Expect = 7.3
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Frame = +2
Query: 35 YQLCGCT--SVPDGTRTYHRSIFYPP 106
Y+L CT S+ Y R + YPP
Sbjct: 451 YELVSCTLTSIDTSISEYQRRMSYPP 476
>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
pombe|chr mitochondrial|||Manual
Length = 537
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = +2
Query: 98 YPPLSGLITPNNGSLVLDTYKIRLNSVQSFAG 193
YPPLS + + + ++ L ++L + S G
Sbjct: 136 YPPLSSITSHSGPAIDLAILSLQLTGISSTLG 167
>SPAC22A12.02c |mug103||sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 124
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2
Query: 5 YYNALLRLENYQLCGCTSV 61
Y+N LRLE ++ G TS+
Sbjct: 16 YFNKNLRLEECEIDGFTSI 34
>SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 449
Score = 22.2 bits (45), Expect = 9.6
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +2
Query: 14 ALLRLENYQLCGCTSV 61
ALLRL + L G TSV
Sbjct: 337 ALLRLTEFDLSGATSV 352
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 22.2 bits (45), Expect = 9.6
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = -2
Query: 106 WRVKNASVVSSCSIRHRCTPAQLVIFQTEERVVVT 2
W +K S V + + H V Q EE+++ T
Sbjct: 216 WNIKKRSAVRTIPVFHSVEAIGWVNGQPEEKILYT 250
>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
Cho2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 905
Score = 22.2 bits (45), Expect = 9.6
Identities = 10/28 (35%), Positives = 12/28 (42%)
Frame = -1
Query: 131 YWGLSNRTMAGKKCFGGKFLFHPAPMYT 48
YWG + F G F P PMY+
Sbjct: 271 YWGDFFFLLRSSLVFNGVFELAPHPMYS 298
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,000,248
Number of Sequences: 5004
Number of extensions: 18833
Number of successful extensions: 39
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 48
effective length of database: 2,122,286
effective search space used: 42445720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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