Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_M06
(206 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,513... 28 0.90
06_03_0650 + 23157130-23157582,23157687-23157898,23157982-231581... 28 1.2
01_06_1582 - 38430573-38430599,38430750-38430857,38431503-384315... 28 1.2
01_01_0170 + 1442526-1442618,1442705-1444210,1444312-1444365 27 2.1
06_03_0324 - 19591267-19592097,19592266-19592583,19592827-19593108 27 2.7
04_04_0363 + 24720054-24720132,24720307-24720804,24720902-247214... 27 2.7
11_06_0117 + 20302795-20304816 26 3.6
08_02_1210 + 25314569-25314596,25315271-25315455,25315539-253156... 26 3.6
02_05_0061 + 25506648-25509399,25509564-25509901,25510392-255105... 26 4.8
12_02_0779 + 23082577-23082903,23083347-23083543,23084346-230844... 25 6.3
12_01_0703 + 6058765-6059091,6059153-6059464,6059560-6059574 25 8.4
11_05_0053 + 18687430-18687524,18687804-18687936,18688153-186882... 25 8.4
11_01_0585 - 4642555-4643130,4643805-4644116,4644178-4644876 25 8.4
10_03_0048 - 7360230-7360805,7361480-7361791,7361853-7362179 25 8.4
06_01_0486 - 3455030-3455770 25 8.4
03_05_0130 - 21104668-21105030,21106045-21106203,21106265-21107032 25 8.4
01_06_1065 - 34238812-34239307,34239583-34240154,34241687-342419... 25 8.4
>02_01_0689 +
5137506-5137591,5138641-5138709,5139489-5139580,
5139967-5140289,5141373-5142479,5142593-5143279,
5144214-5144522,5145488-5145823,5146165-5146263,
5146676-5146940,5146950-5147104,5147666-5149723,
5150168-5150367,5150662-5150718,5150965-5151079
Length = 1985
Score = 28.3 bits (60), Expect = 0.90
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 9 TTRSSVWKITSCAGVHRC-RMEQELTTEAFFTRH 107
T+ SSVW++ SCA + C +M +E FF H
Sbjct: 363 TSPSSVWRMISCAMMEACEKMYKEHGHLVFFCTH 396
>06_03_0650 +
23157130-23157582,23157687-23157898,23157982-23158128,
23158214-23158347,23158442-23158551,23158711-23158817,
23159045-23159183,23159286-23159402,23159737-23159844,
23159927-23159998,23160108-23160230,23160336-23160495,
23160585-23160706,23160825-23160962,23161042-23161184,
23161305-23161367,23161567-23161630,23161709-23161844,
23162123-23162196,23162764-23162858,23162951-23162982,
23163104-23163276
Length = 973
Score = 27.9 bits (59), Expect = 1.2
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -2
Query: 118 QTGQWRVKNASVVSSCSIRH 59
Q GQW + N V++ C + H
Sbjct: 524 QVGQWNMVNKKVINGCKVNH 543
>01_06_1582 -
38430573-38430599,38430750-38430857,38431503-38431569,
38431847-38432070,38432154-38432246,38432665-38432717,
38433122-38433572
Length = 340
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 68 GTRTYHRSIFYPPLSGLITPNNGSL 142
G +HR F+PPLS L P+ +L
Sbjct: 36 GRHHHHRRAFHPPLSSLRDPDKATL 60
>01_01_0170 + 1442526-1442618,1442705-1444210,1444312-1444365
Length = 550
Score = 27.1 bits (57), Expect = 2.1
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +1
Query: 67 WNKNLPPKHFLP 102
W +LPP+HFLP
Sbjct: 71 WTNHLPPRHFLP 82
>06_03_0324 - 19591267-19592097,19592266-19592583,19592827-19593108
Length = 476
Score = 26.6 bits (56), Expect = 2.7
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +1
Query: 16 APPFGKLPVVRVYIGAGWNKNLPPKHFLPAIVRFDNPQ*WKPCFGYL*NP 165
+P G+ V Y AG LP +FLP+++ + W + Y+ NP
Sbjct: 61 SPGDGRTVVFAAYFAAGLR--LPCDNFLPSVLSMYEDRNWMQKWFYISNP 108
>04_04_0363 +
24720054-24720132,24720307-24720804,24720902-24721436,
24721844-24721959,24722512-24723009,24723102-24723637
Length = 753
Score = 26.6 bits (56), Expect = 2.7
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 19 PPFGKLPVVRVYIGAGWN 72
P FG LP+ VY +GW+
Sbjct: 511 PEFGVLPIQTVYTSSGWD 528
>11_06_0117 + 20302795-20304816
Length = 673
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 107 LSGLITPNNGSLVLDTYKIRLNSVQ 181
LSGL+ N G+ LDT + NS+Q
Sbjct: 553 LSGLVASNFGAPRLDTMNLSSNSIQ 577
>08_02_1210 +
25314569-25314596,25315271-25315455,25315539-25315648,
25315756-25315909,25316213-25316237,25316566-25316756,
25316837-25316899,25317012-25317075,25318078-25318109
Length = 283
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 98 YPPLSGLITPNNGSLVLDTYKIRLN 172
Y PL G PN G++V++ K+ N
Sbjct: 214 YSPLDGFGIPNTGNVVMEVEKVLSN 238
>02_05_0061 +
25506648-25509399,25509564-25509901,25510392-25510593,
25510779-25510854,25512036-25512294
Length = 1208
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -3
Query: 126 GVIKPDNGG*KMLRW*VLVPSGTDVHPHN-W*FSK 25
GVI P+ GG + L+W +L + + N W F K
Sbjct: 334 GVIPPELGGLQGLKWFILTENDLEAKESNDWKFMK 368
>12_02_0779 +
23082577-23082903,23083347-23083543,23084346-23084481,
23084558-23084794,23084885-23085108,23085434-23085551,
23086080-23086319,23086423-23086673,23088397-23088484,
23088576-23088727,23089670-23089811
Length = 703
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +1
Query: 22 PFGKLPVVRVYIGAGWNKNLPPKHF 96
P K V+VY+G GW + HF
Sbjct: 458 PVKKTLKVKVYMGDGWRMDFSKTHF 482
>12_01_0703 + 6058765-6059091,6059153-6059464,6059560-6059574
Length = 217
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 163 DFISIQNKASIIGGYQTGQWRVKNASVVS 77
D +SIQ + +I+ QTG+ V+ A + S
Sbjct: 13 DLLSIQEEGTIVQSPQTGEISVRGADLES 41
>11_05_0053 +
18687430-18687524,18687804-18687936,18688153-18688236,
18689045-18689194,18689319-18689510
Length = 217
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/38 (26%), Positives = 18/38 (47%)
Frame = -2
Query: 133 IIGGYQTGQWRVKNASVVSSCSIRHRCTPAQLVIFQTE 20
++ G G+W K+ S +SC ++ C + TE
Sbjct: 102 VLSGTPLGEWIFKSKSKQNSCGLQGACKGYMFALQVTE 139
>11_01_0585 - 4642555-4643130,4643805-4644116,4644178-4644876
Length = 528
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 163 DFISIQNKASIIGGYQTGQWRVKNASVVS 77
D +SIQ + +I+ QTG+ V+ A + S
Sbjct: 137 DLLSIQEEGTIVQSPQTGEISVRGADLES 165
>10_03_0048 - 7360230-7360805,7361480-7361791,7361853-7362179
Length = 404
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 163 DFISIQNKASIIGGYQTGQWRVKNASVVS 77
D +SIQ + +I+ QTG+ V+ A + S
Sbjct: 13 DLLSIQEEGTIVQSPQTGEISVRGADLES 41
>06_01_0486 - 3455030-3455770
Length = 246
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 34 LPVVRVYIGAGWNKNLPP 87
L VV V + GWNK+ PP
Sbjct: 12 LLVVLVSVAHGWNKDCPP 29
>03_05_0130 - 21104668-21105030,21106045-21106203,21106265-21107032
Length = 429
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 163 DFISIQNKASIIGGYQTGQWRVKNASVVS 77
D +SIQ + +I+ QTG+ V+ A + S
Sbjct: 160 DLLSIQEEGTIVQSPQTGEISVRGADLES 188
>01_06_1065 -
34238812-34239307,34239583-34240154,34241687-34241998,
34242060-34242386
Length = 568
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 163 DFISIQNKASIIGGYQTGQWRVKNASVVS 77
D +SIQ + +I+ QTG+ V+ A + S
Sbjct: 13 DLLSIQEEGTIVQSPQTGEISVRGADLES 41
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,088,883
Number of Sequences: 37544
Number of extensions: 141658
Number of successful extensions: 328
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 328
length of database: 14,793,348
effective HSP length: 48
effective length of database: 12,991,236
effective search space used: 259824720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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