Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_M05
         (398 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c...    28   0.61 
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   1.9  
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi...    25   5.7  
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    25   5.7  

>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 801

 Score = 27.9 bits (59), Expect = 0.61
 Identities = 15/63 (23%), Positives = 28/63 (44%)
 Frame = +2

Query: 26  LDDESDPLDAIKAREQAXXXXXXXXXXXXXXXXXPEIKPTKGSIAPVRKGIKETQNVKSQ 205
           LD ES+ L  +K +EQ                  P ++     + P ++ + +T+N+KS 
Sbjct: 181 LDLESEDLMRLKKQEQLDDEIAKKYLLGQQEAEEPLVQQQTSIVNPEKEEVTKTENIKSL 240

Query: 206 ENK 214
           E +
Sbjct: 241 EGE 243


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 140 PTKGSIAPVRKGIKETQNVKSQENKTGEQQKSKGL 244
           PTK S +P+ K  KET      EN++ E +    L
Sbjct: 474 PTKSSASPLVKAPKETPERLCTENQSTENEDQANL 508


>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
           Usp105|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 295 LTTARRWTLAVAIIRPY 245
           L TA+RWT    I RPY
Sbjct: 255 LETAKRWTFESEIKRPY 271


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 128 PEIKPTKGSIAPVRKGIKETQNVKSQENKTGEQQK 232
           PE+KPT  S + V +  K+      Q+ +T  Q K
Sbjct: 451 PEVKPTTPSASKVEEPSKKRDEDNHQKEETVTQPK 485


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,188,565
Number of Sequences: 5004
Number of extensions: 16208
Number of successful extensions: 43
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)