Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_M05
(398 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U38377-3|AAA79748.1| 652|Caenorhabditis elegans Cohesin family ... 29 0.93
Z47809-8|CAH10845.1| 968|Caenorhabditis elegans Hypothetical pr... 28 2.1
Z47809-6|CAD57700.1| 1124|Caenorhabditis elegans Hypothetical pr... 28 2.1
Z47809-5|CAD57699.1| 1019|Caenorhabditis elegans Hypothetical pr... 28 2.1
Z47809-4|CAA87782.1| 1016|Caenorhabditis elegans Hypothetical pr... 28 2.1
Z36719-11|CAH04695.1| 968|Caenorhabditis elegans Hypothetical p... 28 2.1
Z36719-10|CAD57686.1| 1124|Caenorhabditis elegans Hypothetical p... 28 2.1
Z36719-9|CAD57685.1| 1019|Caenorhabditis elegans Hypothetical pr... 28 2.1
Z36719-8|CAA85318.1| 1016|Caenorhabditis elegans Hypothetical pr... 28 2.1
U86640-1|AAB47273.1| 1016|Caenorhabditis elegans MEL-11 protein. 28 2.1
AF043693-4|AAB97538.1| 971|Caenorhabditis elegans Hypothetical ... 28 2.1
AC024809-9|AAO12399.1| 700|Caenorhabditis elegans Hypothetical ... 27 5.0
AC024809-8|AAF59546.2| 741|Caenorhabditis elegans Hypothetical ... 27 5.0
>U38377-3|AAA79748.1| 652|Caenorhabditis elegans Cohesin family
protein 1 protein.
Length = 652
Score = 29.5 bits (63), Expect = 0.93
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -1
Query: 263 CDHSAVQAPCSSVARQFCSLATSHFASP*FP 171
C S A SS FC+ +TSH SP FP
Sbjct: 10 CTISDASAHTSSSRTSFCTPSTSHIVSPSFP 40
>Z47809-8|CAH10845.1| 968|Caenorhabditis elegans Hypothetical
protein C06C3.1d protein.
Length = 968
Score = 28.3 bits (60), Expect = 2.1
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = +3
Query: 285 AVVRNGRKTAPLRTRTVLGDRLDVSSMIDGLTSSAA 392
A ++NG++ +PLR+ T + ++ +DG T ++
Sbjct: 437 AELKNGKEISPLRSETTSSRSISITRSLDGYTDRSS 472
>Z47809-6|CAD57700.1| 1124|Caenorhabditis elegans Hypothetical
protein C06C3.1c protein.
Length = 1124
Score = 28.3 bits (60), Expect = 2.1
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = +3
Query: 285 AVVRNGRKTAPLRTRTVLGDRLDVSSMIDGLTSSAA 392
A ++NG++ +PLR+ T + ++ +DG T ++
Sbjct: 437 AELKNGKEISPLRSETTSSRSISITRSLDGYTDRSS 472
>Z47809-5|CAD57699.1| 1019|Caenorhabditis elegans Hypothetical
protein C06C3.1b protein.
Length = 1019
Score = 28.3 bits (60), Expect = 2.1
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = +3
Query: 285 AVVRNGRKTAPLRTRTVLGDRLDVSSMIDGLTSSAA 392
A ++NG++ +PLR+ T + ++ +DG T ++
Sbjct: 437 AELKNGKEISPLRSETTSSRSISITRSLDGYTDRSS 472
>Z47809-4|CAA87782.1| 1016|Caenorhabditis elegans Hypothetical
protein C06C3.1a protein.
Length = 1016
Score = 28.3 bits (60), Expect = 2.1
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = +3
Query: 285 AVVRNGRKTAPLRTRTVLGDRLDVSSMIDGLTSSAA 392
A ++NG++ +PLR+ T + ++ +DG T ++
Sbjct: 437 AELKNGKEISPLRSETTSSRSISITRSLDGYTDRSS 472
>Z36719-11|CAH04695.1| 968|Caenorhabditis elegans Hypothetical
protein C06C3.1d protein.
Length = 968
Score = 28.3 bits (60), Expect = 2.1
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = +3
Query: 285 AVVRNGRKTAPLRTRTVLGDRLDVSSMIDGLTSSAA 392
A ++NG++ +PLR+ T + ++ +DG T ++
Sbjct: 437 AELKNGKEISPLRSETTSSRSISITRSLDGYTDRSS 472
>Z36719-10|CAD57686.1| 1124|Caenorhabditis elegans Hypothetical
protein C06C3.1c protein.
Length = 1124
Score = 28.3 bits (60), Expect = 2.1
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = +3
Query: 285 AVVRNGRKTAPLRTRTVLGDRLDVSSMIDGLTSSAA 392
A ++NG++ +PLR+ T + ++ +DG T ++
Sbjct: 437 AELKNGKEISPLRSETTSSRSISITRSLDGYTDRSS 472
>Z36719-9|CAD57685.1| 1019|Caenorhabditis elegans Hypothetical
protein C06C3.1b protein.
Length = 1019
Score = 28.3 bits (60), Expect = 2.1
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = +3
Query: 285 AVVRNGRKTAPLRTRTVLGDRLDVSSMIDGLTSSAA 392
A ++NG++ +PLR+ T + ++ +DG T ++
Sbjct: 437 AELKNGKEISPLRSETTSSRSISITRSLDGYTDRSS 472
>Z36719-8|CAA85318.1| 1016|Caenorhabditis elegans Hypothetical
protein C06C3.1a protein.
Length = 1016
Score = 28.3 bits (60), Expect = 2.1
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = +3
Query: 285 AVVRNGRKTAPLRTRTVLGDRLDVSSMIDGLTSSAA 392
A ++NG++ +PLR+ T + ++ +DG T ++
Sbjct: 437 AELKNGKEISPLRSETTSSRSISITRSLDGYTDRSS 472
>U86640-1|AAB47273.1| 1016|Caenorhabditis elegans MEL-11 protein.
Length = 1016
Score = 28.3 bits (60), Expect = 2.1
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = +3
Query: 285 AVVRNGRKTAPLRTRTVLGDRLDVSSMIDGLTSSAA 392
A ++NG++ +PLR+ T + ++ +DG T ++
Sbjct: 437 AELKNGKEISPLRSETTSSRSISITRSLDGYTDRSS 472
>AF043693-4|AAB97538.1| 971|Caenorhabditis elegans Hypothetical
protein C34B2.6 protein.
Length = 971
Score = 28.3 bits (60), Expect = 2.1
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +2
Query: 128 PEIKPTKGSIAPVRKGIKETQNVKSQENKTGEQQKSKGLV 247
P + P+ S+AP +E + + + TGE+QK KG++
Sbjct: 221 PPLAPSVASVAPEISATEEKEEKTTPPSATGEKQK-KGII 259
>AC024809-9|AAO12399.1| 700|Caenorhabditis elegans Hypothetical
protein Y53G8AR.2b protein.
Length = 700
Score = 27.1 bits (57), Expect = 5.0
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +1
Query: 154 YCSSPEGNQGDAKCEVAREQNWRATEEQGAC 246
YC PE DA+C+V R + +E C
Sbjct: 227 YCRPPEDGGEDAECDVCRISDCDVADEMVFC 257
>AC024809-8|AAF59546.2| 741|Caenorhabditis elegans Hypothetical
protein Y53G8AR.2a protein.
Length = 741
Score = 27.1 bits (57), Expect = 5.0
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +1
Query: 154 YCSSPEGNQGDAKCEVAREQNWRATEEQGAC 246
YC PE DA+C+V R + +E C
Sbjct: 268 YCRPPEDGGEDAECDVCRISDCDVADEMVFC 298
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,808,315
Number of Sequences: 27780
Number of extensions: 103536
Number of successful extensions: 319
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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