Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_M04
         (390 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein S10|S...    97   1e-21
SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein S10|Schizosa...    94   8e-21
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb...    27   0.77 
SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13 |Schizo...    25   4.1  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    25   5.5  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    24   7.2  
SPBC106.15 |idi1||isopentenyl-diphosphate delta-isomerase Idi1|S...    24   7.2  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    24   7.2  
SPAC824.08 |gda1|gdp1|guanosine-diphosphatase Gda1|Schizosacchar...    24   9.5  

>SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score = 96.7 bits (230), Expect = 1e-21
 Identities = 54/110 (49%), Positives = 74/110 (67%), Gaps = 3/110 (2%)
 Frame = +1

Query: 61  QEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF--AWRHLLVFNK*GMN 234
           Q+GV+VAKKD++ PKHP++  +PNLQVIKA QSL SRGY+K ++   W +  + N+ G+ 
Sbjct: 17  QQGVLVAKKDFNLPKHPEVG-VPNLQVIKACQSLDSRGYLKTRYNWGWFYYTLTNE-GVE 74

Query: 235 TL-NFLHLPPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRA 381
            L  +LHLP E+VPAT KR VR    R    GRP+   R++   + YRRA
Sbjct: 75  YLREYLHLPAEVVPATHKRQVRPAAPR---AGRPEPRERSSAADAGYRRA 121



 Score = 27.9 bits (59), Expect = 0.59
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
 Frame = +2

Query: 14  MLMPKQNRVSIYEYLFRRESW*LRK---TTMHPNIQIXXXXXXXXXXXXCNHLNLEDMLR 184
           ML+PK+NR +I++ LF++     +K      HP + +            C  L+    L+
Sbjct: 1   MLIPKENRKAIHQALFQQGVLVAKKDFNLPKHPEVGV----PNLQVIKACQSLDSRGYLK 56

Query: 185 NSSHGGIYWY-LTNE 226
              + G ++Y LTNE
Sbjct: 57  TRYNWGWFYYTLTNE 71


>SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 144

 Score = 93.9 bits (223), Expect = 8e-21
 Identities = 54/109 (49%), Positives = 73/109 (66%), Gaps = 3/109 (2%)
 Frame = +1

Query: 64  EGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF--AWRHLLVFNK*GMNT 237
           +GV+VAKKD++ PKHP++  +PNLQVIKA QSL SRGY+K ++   W +  + N+ G+  
Sbjct: 18  QGVLVAKKDFNLPKHPEVG-VPNLQVIKACQSLDSRGYLKTRYNWGWFYYTLTNE-GVEY 75

Query: 238 L-NFLHLPPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRA 381
           L  +LHLP E+VPAT KR VR    R    GRP+   R + D + YRRA
Sbjct: 76  LREYLHLPAEVVPATHKRQVRPTAPR---AGRPEPRERASAD-AGYRRA 120



 Score = 27.1 bits (57), Expect = 1.0
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
 Frame = +2

Query: 14  MLMPKQNRVSIYEYLFRRESW*LRK---TTMHPNIQIXXXXXXXXXXXXCNHLNLEDMLR 184
           ML+PK+NR +I++ LF +     +K      HP + +            C  L+    L+
Sbjct: 1   MLIPKENRKAIHQALFSQGVLVAKKDFNLPKHPEVGV----PNLQVIKACQSLDSRGYLK 56

Query: 185 NSSHGGIYWY-LTNE 226
              + G ++Y LTNE
Sbjct: 57  TRYNWGWFYYTLTNE 71


>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 440

 Score = 27.5 bits (58), Expect = 0.77
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 287 LFRVAGTISGGKCRKFKVFIPHLLNTSK 204
           LFR       G+C+K +  +P LLN+ K
Sbjct: 80  LFRRQSNWKDGRCKKVESMLPQLLNSEK 107


>SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -1

Query: 132 VRDLLEIWMFGCMVVFLSYHDSLLKR 55
           + +  +IW FGC +  + +H S  +R
Sbjct: 259 ITEKADIWSFGCTLYTIMFHASPFER 284


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 259 PEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRS 366
           P I P ++   V   TVR G+   PD P+ +   R+
Sbjct: 791 PFIQPPSMTNQVAYPTVRDGSNNSPDHPSSSNSKRT 826


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 14/43 (32%), Positives = 15/43 (34%)
 Frame = +1

Query: 256 PPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAP 384
           PP   P +   S    T    A     APA  A    AY  AP
Sbjct: 58  PPSGPPPSYSNSAAPATPAASASSAAPAPAPAASQNRAYGAAP 100


>SPBC106.15 |idi1||isopentenyl-diphosphate delta-isomerase
           Idi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 227

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 219 QMRYEYLKFPALTS*NCTSNPEEVSAYRDST 311
           Q   E + FP+L +  C S+P +V+  R +T
Sbjct: 70  QRAEEKITFPSLWTNTCCSHPLDVAGERGNT 100


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 17/45 (37%), Positives = 19/45 (42%)
 Frame = +1

Query: 256 PPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPA 390
           P    P+    S R  T     V  P +PAR     SAY  APPA
Sbjct: 281 PYASTPSAAVGSSRGSTPASATV--PISPARGFPTTSAYNPAPPA 323


>SPAC824.08 |gda1|gdp1|guanosine-diphosphatase
           Gda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 556

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 203 CLHANCSLTYPLDLSDCIALI 141
           CLH N SLT+P   S+   ++
Sbjct: 368 CLHLNASLTHPDSKSEASEVV 388


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,513,623
Number of Sequences: 5004
Number of extensions: 27558
Number of successful extensions: 89
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)