Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_M04
(390 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0970 + 21338072-21338074,21338192-21338240,21338688-213389... 93 7e-20
02_04_0177 + 20669053-20669055,20669150-20669198,20669680-206699... 93 7e-20
01_07_0270 - 42417782-42417850,42418207-42418342,42418826-424191... 86 8e-18
03_01_0474 + 3646724-3646789,3648952-3649067,3649547-3649595,364... 30 0.57
04_04_0674 + 27173948-27174188,27174704-27175260,27175310-271753... 28 3.0
08_02_0824 + 21561699-21562415,21563294-21563362,21563424-215634... 27 5.3
03_05_0264 - 22510997-22511012,22511641-22511709,22511783-225119... 27 5.3
02_02_0437 - 10238786-10239208 27 5.3
08_02_1207 - 25302186-25302275,25303089-25303141,25303400-253037... 26 9.2
05_04_0305 + 20052813-20053996,20055774-20055861,20056470-200565... 26 9.2
>04_03_0970 +
21338072-21338074,21338192-21338240,21338688-21338970,
21339570-21339705,21339761-21339769
Length = 159
Score = 93.1 bits (221), Expect = 7e-20
Identities = 56/117 (47%), Positives = 72/117 (61%), Gaps = 5/117 (4%)
Frame = +1
Query: 37 CFYL*VPLQEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQFAWRHLLVF 216
C YL QEGV+ AKKDY+ KHP ++ +PNLQVIK MQS KS+ YV+E F+W++ +
Sbjct: 12 CKYL---FQEGVLYAKKDYNLAKHPQID-VPNLQVIKLMQSFKSKEYVRETFSWQYYYWY 67
Query: 217 -NK*GMNTL-NFLHLPPEIVPATLKRSVRT--ETVRRGAVG-RPDAPARTAEDRSAY 372
G+ L N+L+LP EIVPATLK+S R G G RP P R DR +
Sbjct: 68 LTNDGIEHLRNYLNLPSEIVPATLKKSARPPGRPFGSGPPGDRPRGPPRFEGDRPRF 124
Score = 27.9 bits (59), Expect = 3.0
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Frame = +2
Query: 14 MLMPKQNRVSIYEYLFRRESW*LRK---TTMHPNIQIXXXXXXXXXXXXCNHLNLEDMLR 184
M++PK+NR I +YLF+ +K HP I + + + E +
Sbjct: 1 MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQIDVPNLQVIKLMQ---SFKSKEYVRE 57
Query: 185 NSSHGGIYWYLTNE 226
S YWYLTN+
Sbjct: 58 TFSWQYYYWYLTND 71
>02_04_0177 +
20669053-20669055,20669150-20669198,20669680-20669962,
20670526-20670661,20671014-20671094
Length = 183
Score = 93.1 bits (221), Expect = 7e-20
Identities = 56/117 (47%), Positives = 72/117 (61%), Gaps = 5/117 (4%)
Frame = +1
Query: 37 CFYL*VPLQEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQFAWRHLLVF 216
C YL QEGV+ AKKDY+ KHP ++ +PNLQVIK MQS KS+ YV+E F+W++ +
Sbjct: 12 CKYL---FQEGVLYAKKDYNLAKHPQID-VPNLQVIKLMQSFKSKEYVRETFSWQYYYWY 67
Query: 217 -NK*GMNTL-NFLHLPPEIVPATLKRSVRT--ETVRRGAVG-RPDAPARTAEDRSAY 372
G+ L N+L+LP EIVPATLK+S R G G RP P R DR +
Sbjct: 68 LTNDGIEHLRNYLNLPSEIVPATLKKSARPPGRPFGSGPPGDRPRGPPRFEGDRPRF 124
Score = 27.9 bits (59), Expect = 3.0
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Frame = +2
Query: 14 MLMPKQNRVSIYEYLFRRESW*LRK---TTMHPNIQIXXXXXXXXXXXXCNHLNLEDMLR 184
M++PK+NR I +YLF+ +K HP I + + + E +
Sbjct: 1 MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQIDVPNLQVIKLMQ---SFKSKEYVRE 57
Query: 185 NSSHGGIYWYLTNE 226
S YWYLTN+
Sbjct: 58 TFSWQYYYWYLTND 71
>01_07_0270 -
42417782-42417850,42418207-42418342,42418826-42419108,
42419459-42419507,42419614-42419616
Length = 179
Score = 86.2 bits (204), Expect = 8e-18
Identities = 51/117 (43%), Positives = 71/117 (60%), Gaps = 5/117 (4%)
Frame = +1
Query: 37 CFYL*VPLQEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQFAWRHLLVF 216
C YL EGV+ AKKDY+ KHP ++ +PNL+VIK MQS KS+ YV+E F+W+H +
Sbjct: 12 CKYL---FHEGVLYAKKDYNLAKHPKVD-VPNLEVIKLMQSFKSKEYVRETFSWQHYYWY 67
Query: 217 -NK*GMNTL-NFLHLPPEIVPATLKRSVR--TETVRRGAVG-RPDAPARTAEDRSAY 372
G+ L ++L+LP E+VP TLK+S + + G G RP P R DR +
Sbjct: 68 LTNDGIEHLRSYLNLPSEVVPNTLKKSAKPPSRPFGSGPPGDRPRGPPRFEGDRPRF 124
>03_01_0474 +
3646724-3646789,3648952-3649067,3649547-3649595,
3649641-3649697,3649743-3650993
Length = 512
Score = 30.3 bits (65), Expect = 0.57
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = -2
Query: 344 AGASGLPTAPRRTVSVRTDLFRVAGTISGGKCR 246
A A G P P + VR L+ T GG CR
Sbjct: 3 AAAGGAPPRPAAGIRVRVPLYMTGQTYQGGSCR 35
>04_04_0674 +
27173948-27174188,27174704-27175260,27175310-27175399,
27175475-27175714,27175801-27176022,27176124-27176433,
27176528-27176847,27176906-27177021,27177133-27177227,
27177331-27177407,27177520-27177615
Length = 787
Score = 27.9 bits (59), Expect = 3.0
Identities = 17/46 (36%), Positives = 20/46 (43%)
Frame = +1
Query: 253 LPPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPA 390
LPP + LKR V RR + PD R +Y R PPA
Sbjct: 510 LPPPVRSRPLKRPVDIRD-RRPVMSIPDRVRRLPPPERSYDRRPPA 554
>08_02_0824 +
21561699-21562415,21563294-21563362,21563424-21563459,
21564533-21564600,21565259-21565277,21565662-21565763,
21566173-21566288,21566501-21566595,21568093-21568264,
21568413-21568493,21569732-21569801,21570106-21570132
Length = 523
Score = 27.1 bits (57), Expect = 5.3
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = +1
Query: 256 PPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPA 390
PPE L+ + RRG +P P A + + +PPA
Sbjct: 100 PPEAASEALRGAASPPERRRGGDRQPSHPTEAASEAPSGSASPPA 144
>03_05_0264 -
22510997-22511012,22511641-22511709,22511783-22511931,
22512235-22512330,22512853-22512981,22513216-22513494,
22513983-22514069
Length = 274
Score = 27.1 bits (57), Expect = 5.3
Identities = 19/54 (35%), Positives = 21/54 (38%)
Frame = -2
Query: 386 GGARR*ADLSSAVRAGASGLPTAPRRTVSVRTDLFRVAGTISGGKCRKFKVFIP 225
GG RR R GA APRR VSV GG C ++V P
Sbjct: 42 GGCRRGCRRGGPRRGGAPAHLRAPRRPVSVGCLSHVTPPASGGGGCYGYRVTPP 95
>02_02_0437 - 10238786-10239208
Length = 140
Score = 27.1 bits (57), Expect = 5.3
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -2
Query: 221 LLNTSKCLHANCSLTYPLDLSDCIALITWRLGIFSRSGCLGAW 93
LL +S CL + T + AL+ W+ G+ CL +W
Sbjct: 9 LLLSSACLLCPANSTASVLDRQADALLQWKSGLDGHGSCLNSW 51
>08_02_1207 -
25302186-25302275,25303089-25303141,25303400-25303788,
25303968-25304338,25304362-25304502
Length = 347
Score = 26.2 bits (55), Expect = 9.2
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = +3
Query: 276 NPEEVSAYRDSTSWCSWQA 332
NP+E+S++ +T+ CSW +
Sbjct: 20 NPDELSSWLPATNCCSWDS 38
>05_04_0305 +
20052813-20053996,20055774-20055861,20056470-20056522,
20056585-20056615
Length = 451
Score = 26.2 bits (55), Expect = 9.2
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 368 ADLSSAVRAGASGLPTAPRRTVSVRTDLFRVAG 270
AD+S+ VRA + L + P RT+ + D R G
Sbjct: 86 ADISATVRAFSRILASDPARTLQPKLDYLRSVG 118
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,209,156
Number of Sequences: 37544
Number of extensions: 184983
Number of successful extensions: 617
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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