Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_M04
         (390 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003151-12|AAK18912.1|  149|Caenorhabditis elegans Ribosomal pr...    84   4e-17
U97404-2|AAB93309.1|  795|Caenorhabditis elegans Acid-sensing/am...    27   3.6  
Z70271-3|CAA94234.1|  358|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z22177-2|CAA80145.1| 1418|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z75552-2|CAA99944.1|  894|Caenorhabditis elegans Hypothetical pr...    26   8.2  
Z75552-1|CAA99941.1|  920|Caenorhabditis elegans Hypothetical pr...    26   8.2  
U40933-9|ABD63229.1|  867|Caenorhabditis elegans Hypothetical pr...    26   8.2  
U40933-8|AAA81677.1| 1030|Caenorhabditis elegans Hypothetical pr...    26   8.2  

>AF003151-12|AAK18912.1|  149|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 10 protein.
          Length = 149

 Score = 83.8 bits (198), Expect = 4e-17
 Identities = 51/106 (48%), Positives = 63/106 (59%), Gaps = 2/106 (1%)
 Frame = +1

Query: 64  EGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQFAWRHLLVF-NK*GMNTL 240
           EGV VAKKD++A  HP++E + NL+VIK ++SL SR  VKEQFAWRH   +    G+  L
Sbjct: 18  EGVTVAKKDFNAKTHPNIEGVSNLEVIKTLKSLASRELVKEQFAWRHYYWYLTDAGILYL 77

Query: 241 -NFLHLPPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYR 375
             +L LP EIVPAT+K   R   V       P A      DR AYR
Sbjct: 78  REYLALPAEIVPATIKTKPREIRVPH-EDRAPRAAQGEKGDREAYR 122


>U97404-2|AAB93309.1|  795|Caenorhabditis elegans
           Acid-sensing/amiloride-sensitiveion channel family
           protein 1 protein.
          Length = 795

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +3

Query: 192 RMEAFTGI*QMRYEYLKFPALTS*NCTSNPEEVSAYRD 305
           R +   G+ ++++E +KFPA+T   C  NP + SA R+
Sbjct: 84  RNDIIVGV-EIKFEEIKFPAVTI--CNMNPYKNSAARE 118


>Z70271-3|CAA94234.1|  358|Caenorhabditis elegans Hypothetical
           protein W08D2.6 protein.
          Length = 358

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 316 GAVGRPDAPARTAEDRSAYRRAPP 387
           G+V R   PAR A D   Y+ APP
Sbjct: 76  GSVFRARRPARGAYDEGDYKEAPP 99


>Z22177-2|CAA80145.1| 1418|Caenorhabditis elegans Hypothetical
           protein ZK512.3 protein.
          Length = 1418

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -2

Query: 185 SLTYPLDLSDCIALITWRLGIFSRSG 108
           S  YPL L+DC  LIT +L + S SG
Sbjct: 293 SQLYPLGLADCYTLIT-KLLVSSNSG 317


>Z75552-2|CAA99944.1|  894|Caenorhabditis elegans Hypothetical
           protein W04D2.1b protein.
          Length = 894

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 323 LAGLMLQHEQLKIDQLIGAHHQ 388
           LA L++ HE  +I++L+ AH Q
Sbjct: 537 LADLVIVHEMREIEELVNAHDQ 558


>Z75552-1|CAA99941.1|  920|Caenorhabditis elegans Hypothetical
           protein W04D2.1a protein.
          Length = 920

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 323 LAGLMLQHEQLKIDQLIGAHHQ 388
           LA L++ HE  +I++L+ AH Q
Sbjct: 563 LADLVIVHEMREIEELVNAHDQ 584


>U40933-9|ABD63229.1|  867|Caenorhabditis elegans Hypothetical
           protein F20D12.1b protein.
          Length = 867

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +1

Query: 70  VMVAKKDYHAPKHPDL-EKIPNLQ 138
           + V+  DY+APK P+  +K PNL+
Sbjct: 285 ITVSDVDYNAPKDPEFRQKYPNLK 308


>U40933-8|AAA81677.1| 1030|Caenorhabditis elegans Hypothetical
           protein F20D12.1a protein.
          Length = 1030

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +1

Query: 70  VMVAKKDYHAPKHPDL-EKIPNLQ 138
           + V+  DY+APK P+  +K PNL+
Sbjct: 448 ITVSDVDYNAPKDPEFRQKYPNLK 471


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,477,401
Number of Sequences: 27780
Number of extensions: 158912
Number of successful extensions: 415
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)