Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_M04
         (390 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    24   0.71 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   1.6  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   2.2  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   2.9  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   5.0  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   6.6  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   6.6  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   6.6  

>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 23.8 bits (49), Expect = 0.71
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
 Frame = -2

Query: 362 LSSAVRAGASGLPTAPRRTVSVRTDLFRVAGTISGGKCRKFKVFIPH------LLNTSKC 201
           L+  + AGA G+ ++P   +S    L  +    + G CR F     H         T   
Sbjct: 77  LAVFIVAGAVGVFSSPTILISYIYILMAILRMSADGGCRNFSTCSSHPTAAFISYGTLFF 136

Query: 200 LHANCSLTYPLDLSDCIAL 144
           ++ + S T+ LDL+  +++
Sbjct: 137 IYVHPSATFSLDLNKVVSV 155


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 16   VDAKTKPCFYL*VPLQEGVMVAKKDYHAPKHPDLEKIP 129
            V+ K+KP  +  +   E  M  KK      +PDL + P
Sbjct: 1718 VETKSKPYKFHCMEKNEAAMKLKKRIEKGANPDLSQKP 1755


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
 Frame = +1

Query: 85  KDYHAPKHPDLEKI--PNLQVIKAMQSLKSRGYVKEQ 189
           KD   P    + KI  PN+ +IK    L   G V E+
Sbjct: 242 KDAKVPIIVAINKIDKPNIDIIKVQYELAKHGIVIEE 278


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -1

Query: 120 LEIWMFGCMV 91
           L++WM GCM+
Sbjct: 262 LDVWMAGCMM 271


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +1

Query: 247 LHLPPEIVPATLKRSVRTETVRRGAVGRPDAPARTAE 357
           L  P    P T+++ +R   +RR     PD    TA+
Sbjct: 156 LPTPVTPTPTTVQQLLRRAQIRRNERRTPDPHDETAK 192


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 16  VDAKTKPCFYL*VPLQ 63
           +DA TKPC +   P Q
Sbjct: 294 IDANTKPCTWAARPWQ 309


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 16  VDAKTKPCFYL*VPLQ 63
           +DA TKPC +   P Q
Sbjct: 294 IDANTKPCTWAARPWQ 309


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 16  VDAKTKPCFYL*VPLQ 63
           +DA TKPC +   P Q
Sbjct: 294 IDANTKPCTWAARPWQ 309


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,357
Number of Sequences: 438
Number of extensions: 1962
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9514659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)