Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_M03
         (571 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    28   4.1  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    28   4.1  
AF106575-5|AAC78171.1|  421|Caenorhabditis elegans Hypothetical ...    27   9.5  

>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
            F29D11.1 protein.
          Length = 4753

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 42   LQPTLNYTFISSNPI*YICI*NNLSQFTVK 131
            LQP +     S+NP  ++C+ NN + FT K
Sbjct: 1742 LQPVIKNNPCSTNPCSHLCLLNNKNTFTCK 1771


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
            protein protein.
          Length = 4753

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 42   LQPTLNYTFISSNPI*YICI*NNLSQFTVK 131
            LQP +     S+NP  ++C+ NN + FT K
Sbjct: 1742 LQPVIKNNPCSTNPCSHLCLLNNKNTFTCK 1771


>AF106575-5|AAC78171.1|  421|Caenorhabditis elegans Hypothetical
           protein K04F1.12 protein.
          Length = 421

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = -3

Query: 353 IFLSEVLKFAIFIKT*PSDYCTSLCL---IYINYHTH*SEYNIEQTMKNLKTYI 201
           IF   +L ++  IK  P   C+++C    +YI Y T  +E  +  T KNLK  I
Sbjct: 78  IFDGSIL-YSDSIKNFPKK-CSTVCAPDALYIGYETDLTEKQLTSTFKNLKHLI 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,431,864
Number of Sequences: 27780
Number of extensions: 212962
Number of successful extensions: 311
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)