Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_M02
         (593 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    27   2.7  
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    27   2.7  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    26   3.6  

>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +3

Query: 339 PAYLLSESPTLQGATKPPHSAPETPP 416
           P+Y  S  P  Q  T P  S+  TPP
Sbjct: 216 PSYAASTQPEFQQTTSPIFSSSSTPP 241


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 19/70 (27%), Positives = 28/70 (40%)
 Frame = +3

Query: 357 ESPTLQGATKPPHSAPETPPLRSXAKSGRRVRFQDFYRP*RSPGGLV*QPDHRRPLPRIS 536
           +S  L+  +  PH A    P     +S RR     +    RSP G    PD+ R  P+ +
Sbjct: 109 DSGRLRSRSPSPHEARSRSPYNDE-RSDRRSMSPRYRSRSRSPDGRSRSPDYDRRSPKRN 167

Query: 537 SEVSGETTFA 566
                  +FA
Sbjct: 168 HRSPSPVSFA 177


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 351 LSESPTLQGATKPPHSAPETPPLRSXAKSGRRVR 452
           L+ SPT    T  P+S  ++P L S A +G   R
Sbjct: 273 LTASPTPSSPTGTPNSMSKSPSLSSLASTGASYR 306


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,384,961
Number of Sequences: 5004
Number of extensions: 45584
Number of successful extensions: 132
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)