Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_M02
(593 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1748 - 29195037-29195427,29195552-29195679,29195810-291959... 31 0.92
01_03_0088 + 12327339-12328092,12329474-12329601,12330249-123304... 29 2.1
07_01_0040 + 325737-328181 29 2.8
04_03_0441 + 15956927-15957191,15957359-15957737,15958197-159584... 29 2.8
02_01_0762 - 5654832-5655058,5655158-5655350 29 2.8
12_02_1255 + 27360958-27362682 29 3.7
03_05_1116 + 30522573-30523112,30523201-30523353,30524053-30524325 29 3.7
04_04_0534 + 26071227-26071811 28 4.9
01_07_0025 + 40565296-40565497,40565591-40566075 28 4.9
10_08_0432 - 17875427-17875807,17877810-17879099 28 6.5
09_01_0008 - 233137-233279,233712-233827,235376-235720,236218-23... 28 6.5
07_03_1094 + 23919878-23920520,23921297-23921363,23921364-239214... 28 6.5
03_01_0121 + 940338-940637,941023-941324,941417-941969,943889-94... 28 6.5
01_06_0812 + 32161218-32161540,32161732-32161843,32162017-321621... 27 8.5
>07_03_1748 -
29195037-29195427,29195552-29195679,29195810-29195938,
29196334-29196412,29196508-29196671,29196754-29196936,
29197021-29197146,29197237-29197328,29197412-29197508,
29198013-29198339
Length = 571
Score = 30.7 bits (66), Expect = 0.92
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 339 PAYLLSESPTLQGATKPPHSAPETPPLRSXAKS 437
P+ + PT AT PP SAP +PP A+S
Sbjct: 68 PSSQADDVPTTTTATSPPSSAPSSPPSSPPAES 100
>01_03_0088 +
12327339-12328092,12329474-12329601,12330249-12330474,
12332638-12332765,12332880-12333033,12333408-12333841
Length = 607
Score = 29.5 bits (63), Expect = 2.1
Identities = 25/80 (31%), Positives = 32/80 (40%), Gaps = 8/80 (10%)
Frame = +3
Query: 354 SESPTLQGATKPPHSAPETPPLRSXAK--SGRRVRFQDFYRP*RSPGG--LV*QPD---- 509
S P L P H P PPL S + S RR R P GG P
Sbjct: 22 SPPPPLPNCYDPKHRRPAPPPLPSARRLPSNRRRRHDQPPNPTTGNGGNPAFRAPHLRTA 81
Query: 510 HRRPLPRISSEVSGETTFAA 569
+R+P+P +++ GE AA
Sbjct: 82 YRKPVPPVAAAGEGEALLAA 101
>07_01_0040 + 325737-328181
Length = 814
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +2
Query: 479 VSGGAGVATRSSSSAPAHLIRGVG 550
+SGG G ++ SSSS+ +HL GVG
Sbjct: 74 ISGGNGSSSSSSSSSISHLSAGVG 97
>04_03_0441 +
15956927-15957191,15957359-15957737,15958197-15958421,
15958549-15958684,15960559-15960810,15961585-15961881
Length = 517
Score = 29.1 bits (62), Expect = 2.8
Identities = 21/70 (30%), Positives = 33/70 (47%)
Frame = +1
Query: 373 KEPRSLHTAHPKLHLYVHXRNPVEESGSRTFIDRNGLRGGWCSNPIIVVRSRASHPRCRA 552
++PRSL + + HL++H +EE+ S RN L S+ ++ A +
Sbjct: 107 EDPRSLLSLYNAAHLFIHGEPELEEAIS---FARNHLES--MSSHSVLKAPLADQVKRHL 161
Query: 553 RRPLPRGQSR 582
R PLPR R
Sbjct: 162 RLPLPRTHKR 171
>02_01_0762 - 5654832-5655058,5655158-5655350
Length = 139
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +3
Query: 291 IDIAGKIVTVSIDRL-KPAYLLSESPTLQGATKPPHSAPETPPLRSXAKSGRRVRF 455
+ ++G IV S+ R +PA + + +P S+ + R +SGRRVRF
Sbjct: 22 VAVSGSIVIFSLCRAARPAAAAEAEAEAEASLRPCLSSSSSSSERRRRRSGRRVRF 77
>12_02_1255 + 27360958-27362682
Length = 574
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 363 PTLQGATKPPHSAPETPPLRSXAKSGRRVR 452
P L ATKP +A ETPP + + R +R
Sbjct: 290 PALSAATKPSPAAAETPPATAMERVVRALR 319
>03_05_1116 + 30522573-30523112,30523201-30523353,30524053-30524325
Length = 321
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Frame = +3
Query: 363 PTLQGATKPPHSA----PETPPLRSXAKSGRRVRFQ 458
P GA PH + P TPP+RS AKS RR R Q
Sbjct: 37 PLFGGADTTPHGSSVTEPWTPPMRSTAKS-RRPRQQ 71
>04_04_0534 + 26071227-26071811
Length = 194
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/22 (63%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = -3
Query: 588 AGSRLATRQRSSRPTPRMR-CA 526
AG+RLATR+R RP R R CA
Sbjct: 88 AGARLATRRRGRRPARRRRDCA 109
>01_07_0025 + 40565296-40565497,40565591-40566075
Length = 228
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -3
Query: 558 SSRPTPRMRCAGADDDDRVATPA 490
S R PR R A ADDDD ++P+
Sbjct: 179 SIRGAPRRRAAAADDDDMPSSPS 201
>10_08_0432 - 17875427-17875807,17877810-17879099
Length = 556
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 576 LATRQRSSRPTPRMRCAGADDDDRVATP 493
+ +RSS P P + GAD+DD V P
Sbjct: 374 IVAARRSSPPAPAVAANGADEDDLVFHP 401
>09_01_0008 -
233137-233279,233712-233827,235376-235720,236218-236292,
236508-236636,237516-237589,237836-237968,239366-239584,
239671-239756,239843-241107,241304-241640,242548-242862,
243614-243697,243776-243883,243981-244079
Length = 1175
Score = 27.9 bits (59), Expect = 6.5
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Frame = -1
Query: 590 WPVRDWP--RGKGRLARHLG*DARERTTMIGL---LHQPPRRPLRSIKVLEPDSSTG 435
W + W RGK R +G A + I +HQ PR PL + + DSSTG
Sbjct: 24 WERKYWSCSRGKDRYPYPVGYHAVRHFSGISYTMQIHQGPRGPLFQVTSTQGDSSTG 80
>07_03_1094 +
23919878-23920520,23921297-23921363,23921364-23921453,
23922220-23922284,23922372-23922470,23922851-23922992,
23923100-23923139
Length = 381
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 384 KPPHSAPETPPLRSXAKSGRR 446
KPP P TPP+ S A GRR
Sbjct: 6 KPPVPPPSTPPMDSWACGGRR 26
>03_01_0121 +
940338-940637,941023-941324,941417-941969,943889-944848
Length = 704
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = -1
Query: 467 IKVLEPDSSTGFRX*T*RWSFGCAVWRLRGSLQRR 363
I VL DSS GF W WR+ G L RR
Sbjct: 524 IHVLPFDSSDGFHHYAIAWGADAIEWRIDGELIRR 558
>01_06_0812 +
32161218-32161540,32161732-32161843,32162017-32162176,
32162589-32162737,32162832-32162983,32163744-32163858,
32163956-32164093
Length = 382
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +3
Query: 378 ATKPPHSAPETPPLRS 425
AT+PPH AP PP R+
Sbjct: 15 ATRPPHPAPPPPPPRT 30
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,390,349
Number of Sequences: 37544
Number of extensions: 373082
Number of successful extensions: 1545
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1542
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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