Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_M02
         (593 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ...    31   0.62 
EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of g...    29   2.5  
AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical ...    29   2.5  
Z81081-2|CAB03091.2|  451|Caenorhabditis elegans Hypothetical pr...    29   3.3  

>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
            protein Y53C10A.10 protein.
          Length = 1582

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
 Frame = +2

Query: 347  FTQRVPDAARSHEASTQRTRNSTFT-FT-GEIR*KSQVP--GLLSTVTVSGGAGVATRSS 514
            ++   P  ARS EAS+  TR++T T FT  EIR  S +   G+ ST   S G+  +  ++
Sbjct: 829  YSSTTPIIARSSEASSTDTRSTTSTIFTSSEIRPTSSITILGVESTTASSTGSTTSESTT 888

Query: 515  SS 520
            SS
Sbjct: 889  SS 890


>EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of glp-1
            protein.
          Length = 1492

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3

Query: 321  SIDRLKPAYLLSESPTLQGATKPPHSAPETPPLRSXAKS 437
            S+  +KPA  +   P +     P H A ETP L+S   S
Sbjct: 1387 SVKPVKPAAAVQPMPQMTAQQVPAHGAQETPILKSSELS 1425


>AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical
            protein Y53H1C.2a protein.
          Length = 1512

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3

Query: 321  SIDRLKPAYLLSESPTLQGATKPPHSAPETPPLRSXAKS 437
            S+  +KPA  +   P +     P H A ETP L+S   S
Sbjct: 1407 SVKPVKPAAAVQPMPQMTAQQVPAHGAQETPILKSSELS 1445


>Z81081-2|CAB03091.2|  451|Caenorhabditis elegans Hypothetical
           protein F42D1.3 protein.
          Length = 451

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +1

Query: 46  CRIRHERLQKLLITVTSYHVCAVHVQFETYNVTRHG 153
           C +++ RL  ++ITVTS+ +C +   F+    T HG
Sbjct: 177 CNVKNVRLATMIITVTSF-LCGLPKSFDYEYETVHG 211


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,699,672
Number of Sequences: 27780
Number of extensions: 278512
Number of successful extensions: 886
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)