Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_M01
(574 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 140 2e-34
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 85 9e-18
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 74 1e-14
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 68 1e-12
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 62 4e-11
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 58 9e-10
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 50 2e-07
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 37 0.002
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|... 26 3.4
SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha... 26 3.4
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p... 26 3.4
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo... 25 7.9
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 140 bits (338), Expect = 2e-34
Identities = 76/180 (42%), Positives = 102/180 (56%)
Frame = +1
Query: 10 DLVEEVNESGGKYIKMTGCSQXXXXXXXXXXXXXXXXXXEAARSLHDALCVVRCVARRXX 189
DLVEE + SG K +K +G EA RSLHDALCV+RC+ ++
Sbjct: 349 DLVEETSSSGEKIVKFSGVKNAGKTVSILCRGANLLTLEEAERSLHDALCVIRCLVKQRA 408
Query: 190 XXXXXXXXXXXXXXXXXXXXXXXXXXDHYCLRAYADALEVVPSTLAENAGLNPIETVTEL 369
+ C+RA+++ALE++P TLAENAGLN I+ VTEL
Sbjct: 409 LIAGGGSPEIEAAQRLLEHARQLEGREAICIRAFSEALEIIPVTLAENAGLNAIQVVTEL 468
Query: 370 RAAHARAADSGEVSSAGVNVRRGRVTDMRAEHVLQPLHVTSSALALATETVRAILKIDDI 549
R+ HA +GE +AG+NVR+G VT++ E+VLQPL V SA+ LA ET + I+KIDDI
Sbjct: 469 RSRHA----NGE-KTAGINVRKGIVTNILEENVLQPLLVNISAIQLAAETTKMIMKIDDI 523
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 84.6 bits (200), Expect = 9e-18
Identities = 48/142 (33%), Positives = 71/142 (50%)
Frame = +1
Query: 127 EAARSLHDALCVVRCVARRXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHYCLRAYADALE 306
EA R+LHDALCVVR + R D Y + A+ADAL+
Sbjct: 399 EAKRALHDALCVVRNLIRDNRVVYGGGAAEISCSLAVTKEAEKIPGIDQYSMGAFADALD 458
Query: 307 VVPSTLAENAGLNPIETVTELRAAHARAADSGEVSSAGVNVRRGRVTDMRAEHVLQPLHV 486
+P LAEN+GL+ IE +T ++A H + + G++ + DMR + V+ PL
Sbjct: 459 TIPLALAENSGLSSIEALTAVKARHVKE----NKAYLGIDCLQTGSNDMRKQFVIDPLIG 514
Query: 487 TSSALALATETVRAILKIDDIV 552
L LAT+ R +LK++DI+
Sbjct: 515 KKQQLLLATQLCRMVLKVNDII 536
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 74.1 bits (174), Expect = 1e-14
Identities = 46/143 (32%), Positives = 65/143 (45%)
Frame = +1
Query: 127 EAARSLHDALCVVRCVARRXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHYCLRAYADALE 306
E R+L DA+ V R V + RA ADA+E
Sbjct: 384 EVERNLQDAMAVARNVFFHPKLSPGGGATEMAVSVRLAEKARSIEGVAQWPYRAVADAIE 443
Query: 307 VVPSTLAENAGLNPIETVTELRAAHARAADSGEVSSAGVNVRRGRVTDMRAEHVLQPLHV 486
++P TL +N G NPI+ +TELRA HA S G++ GRV DM V +P V
Sbjct: 444 IIPRTLVQNCGANPIKALTELRAKHAEGQ-----HSFGIDGETGRVVDMHEYGVWEPEAV 498
Query: 487 TSSALALATETVRAILKIDDIVN 555
++ A E+ +L++DDIV+
Sbjct: 499 KLQSIKTAIESACLLLRVDDIVS 521
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 67.7 bits (158), Expect = 1e-12
Identities = 33/93 (35%), Positives = 53/93 (56%)
Frame = +1
Query: 274 YCLRAYADALEVVPSTLAENAGLNPIETVTELRAAHARAADSGEVSSAGVNVRRGRVTDM 453
+ ++ Y +A EVVP T++ENAGL+P + +++L AAH + ++GE V D
Sbjct: 436 HAIKQYGEAFEVVPRTISENAGLDPTDVISKLYAAHHK--ENGESIGVDVECENDGTLDA 493
Query: 454 RAEHVLQPLHVTSSALALATETVRAILKIDDIV 552
+ + L SA+ LATETV +L +D +V
Sbjct: 494 KEAGIFDVLLAKKSAIRLATETVLTVLNVDQVV 526
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 62.5 bits (145), Expect = 4e-11
Identities = 42/179 (23%), Positives = 76/179 (42%)
Frame = +1
Query: 16 VEEVNESGGKYIKMTGCSQXXXXXXXXXXXXXXXXXXEAARSLHDALCVVRCVARRXXXX 195
+EE+ K IK +G + E+ R++HDAL V+
Sbjct: 345 IEEIIIGEDKMIKFSGV-EAGEACTIVLRGATHQLLDESERAIHDALAVLSQTVAESRVT 403
Query: 196 XXXXXXXXXXXXXXXXXXXXXXXXDHYCLRAYADALEVVPSTLAENAGLNPIETVTELRA 375
+ A+A AL +P+ LA+NAG + E V +L+A
Sbjct: 404 LGGGCAEMLMAKAVEEAATHEPGKKAVAVSAFAKALSQLPTILADNAGFDSSELVAQLKA 463
Query: 376 AHARAADSGEVSSAGVNVRRGRVTDMRAEHVLQPLHVTSSALALATETVRAILKIDDIV 552
AH D + G+++ G + DMRA+ +L+ L + + ++ +E + +L++D I+
Sbjct: 464 AHYDGND-----TMGLDMDEGEIADMRAKGILEALKLKQAVVSSGSEGAQLLLRVDTIL 517
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 58.0 bits (134), Expect = 9e-10
Identities = 45/181 (24%), Positives = 72/181 (39%)
Frame = +1
Query: 10 DLVEEVNESGGKYIKMTGCSQXXXXXXXXXXXXXXXXXXEAARSLHDALCVVRCVARRXX 189
D EE G ++ GC + E RSLHDA+ +V+ +
Sbjct: 351 DTFEERQIGGDRFNLFEGCPKAKTCTLILRGGADQFIA-EVERSLHDAIMIVKHALKNNL 409
Query: 190 XXXXXXXXXXXXXXXXXXXXXXXXXXDHYCLRAYADALEVVPSTLAENAGLNPIETVTEL 369
+ A+A +LEV+P L +NAG + + +L
Sbjct: 410 VVAGGGACEMELSKYLRDYSLTISGKQQNFIAAFARSLEVIPRQLCDNAGFDSTNILNKL 469
Query: 370 RAAHARAADSGEVSSAGVNVRRGRVTDMRAEHVLQPLHVTSSALALATETVRAILKIDDI 549
R HA+ GE+ AGV++ V + + V +P V S+A+ ATE IL +D+
Sbjct: 470 RMQHAK----GEM-WAGVDMDSEGVANNFEKFVWEPSTVKSNAILSATEAATLILSVDET 524
Query: 550 V 552
+
Sbjct: 525 I 525
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 50.4 bits (115), Expect = 2e-07
Identities = 40/147 (27%), Positives = 60/147 (40%), Gaps = 8/147 (5%)
Frame = +1
Query: 127 EAARSLHDALCVVRCVARRXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHYCLRAYADALE 306
E RS+HD+L VV+ + + +A AL
Sbjct: 392 EMERSMHDSLSVVKRTLESGKVVPGGGAVETALSIYLENFATSLGSREQLAIAEFAQALL 451
Query: 307 VVPSTLAENAGLNPIETVTELRAAHARAADSGEVSSA--------GVNVRRGRVTDMRAE 462
++P TLA NA + E +LRA HA A+ + EV+ G+++ G + D
Sbjct: 452 IIPRTLAVNAAKDSTELTAKLRAYHA-ASQNAEVTDVKKRGYKNYGLDLLNGVIRDNVKA 510
Query: 463 HVLQPLHVTSSALALATETVRAILKID 543
VL+P +L A E AIL+ID
Sbjct: 511 GVLEPSMSKLKSLKSAVEACIAILRID 537
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 37.1 bits (82), Expect = 0.002
Identities = 23/89 (25%), Positives = 41/89 (46%)
Frame = +1
Query: 286 AYADALEVVPSTLAENAGLNPIETVTELRAAHARAADSGEVSSAGVNVRRGRVTDMRAEH 465
AYADAL ++P TLA N+ + + + L+ ++ E G++++ G D E
Sbjct: 440 AYADALLIIPKTLAANSSYDTQDAIVALQ------EEASEGYKVGLDLKTGMPFDPEVEG 493
Query: 466 VLQPLHVTSSALALATETVRAILKIDDIV 552
+ V L AT ++ +D I+
Sbjct: 494 IYDNYRVIRHMLHSATVIASNLISVDQIL 522
>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 26.2 bits (55), Expect = 3.4
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -2
Query: 303 KCICIRAEAVVVSSGGSYRSASQCRGGGCLGCSA 202
KCIC+ +V++ SG R+ + C+G +A
Sbjct: 363 KCICLTDLSVILLSGSFSRNLERVHLSYCIGLTA 396
>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
S5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 203
Score = 26.2 bits (55), Expect = 3.4
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Frame = +1
Query: 343 NPIETVTELRAAHARAADSGEVSSAGVNVRRGRVTDMRAEHVLQPLH-VTSSALALATET 519
NP++ + + AA DS + SAG VRR V V Q L +T A A
Sbjct: 106 NPLQVLVDAVAACGPREDSTRIGSAG-TVRRQAVDVSPLRRVNQALALITIGAREAAFRN 164
Query: 520 VRAILK--IDDIVN 555
V++I + ++I+N
Sbjct: 165 VKSISECLAEEIIN 178
>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 26.2 bits (55), Expect = 3.4
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Frame = +1
Query: 343 NPIETVTELRAAHARAADSGEVSSAGVNVRRGRVTDMRAEHVLQPLH-VTSSALALATET 519
NP++ + + AA DS + SAG VRR V V Q L +T A A
Sbjct: 106 NPLQVLVDAVAACGPREDSTRIGSAG-TVRRQAVDVSPLRRVNQALALITIGAREAAFRN 164
Query: 520 VRAILK--IDDIVN 555
V++I + ++I+N
Sbjct: 165 VKSISECLAEEIIN 178
>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1000
Score = 25.0 bits (52), Expect = 7.9
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -2
Query: 90 GNCASTLTASRHLNIFSTRFIDFF 19
GN A+TLT+ HL + + ++F
Sbjct: 456 GNSANTLTSLLHLTVLDLKIFEWF 479
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,750,086
Number of Sequences: 5004
Number of extensions: 26052
Number of successful extensions: 81
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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