Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_L24
         (402 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc...    29   0.36 
SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss...    26   2.5  
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    25   4.4  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    25   5.8  

>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 940

 Score = 28.7 bits (61), Expect = 0.36
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 296 TSKCEARPRRLATSLYTTKT*EPHPAPTGLYYILIHI 186
           T K + R R L  ++++     PH A T + Y+L HI
Sbjct: 365 TEKDDGRRRALTKAIHSCAINFPHTAATAIQYLLSHI 401


>SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit
           Ssl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 149 RFSIVSVAGEVSLCVLVCSKVQS 217
           R  IV +A EV++C  +C+K  S
Sbjct: 221 RVRIVGLAAEVAICKEICNKTNS 243


>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 94  SLVAICNCFTRVHCSIVIS-ILDCICGG*SVIMCISM 201
           SLV I  CF R + S+V++ +L  IC G     C+S+
Sbjct: 120 SLVTIFTCFVRHYWSLVLTRLLLGICEG-GFFPCLSL 155


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 207  LLHTNTHNDTSPATDTIEN 151
            LLH+N H+  SP  D+ E+
Sbjct: 1064 LLHSNLHSPVSPVVDSNED 1082


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,387,026
Number of Sequences: 5004
Number of extensions: 24137
Number of successful extensions: 76
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)