Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_L24
         (402 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0643 - 4708245-4708355,4708456-4708800,4709124-4709700,470...    29   1.4  
10_06_0169 + 11420115-11420163,11420922-11421041,11421938-114220...    28   2.4  
08_01_0770 + 7445021-7445674                                           27   4.2  
01_06_1448 - 37434159-37434242,37434875-37434968,37435077-374352...    27   5.6  

>03_01_0643 -
           4708245-4708355,4708456-4708800,4709124-4709700,
           4709780-4710462,4710618-4710980,4712199-4712530,
           4712856-4713048,4713748-4713790,4713964-4714052,
           4714186-4714301,4714816-4714935,4715538-4715577
          Length = 1003

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 194 LVCSKVQSEPGAVPMFLSCTNSSRAAAVAPRTYLFR 301
           LVC     +PG VP +++C+N  R A    R + FR
Sbjct: 469 LVCHSPSHKPGRVPFYVTCSN--RLACSEVREFDFR 502


>10_06_0169 +
           11420115-11420163,11420922-11421041,11421938-11422053,
           11422125-11422213,11422413-11422455,11423296-11423440,
           11423581-11423688,11423767-11424086,11424255-11424671,
           11424776-11425470,11425564-11426107,11426338-11426682,
           11426799-11426909
          Length = 1033

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +2

Query: 152 FSIVSVAGEVSLC-VLVCSKVQSEPGAVPMFLSCTNSSRAAAVAPRTYLFR 301
           F  V +  E+S    L C     +PG VP +++C+N  R A    R + FR
Sbjct: 492 FGEVEIQAEISADGTLRCYSPPHKPGRVPFYVTCSN--RLACSEVREFEFR 540


>08_01_0770 + 7445021-7445674
          Length = 217

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 234 GTAPGSDWTLLHTNTHNDTSPATDTIENRYY 142
           G A GSD    +  T+ND  PA +T+ N  Y
Sbjct: 176 GNAAGSDCETGYLYTYNDDLPAQETLGNCLY 206


>01_06_1448 -
           37434159-37434242,37434875-37434968,37435077-37435250,
           37435536-37435627,37435947-37436056,37437274-37437349,
           37437445-37437537,37437617-37437817
          Length = 307

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = -1

Query: 273 AAARDEFVHDKNIGTAPGSDWTLLHTNTHNDTSPATDTIENRYYNRTMNSSKTVA 109
           AAA    + + N+  +  SD    +T+  N    ATD+I+N  Y +    ++ V+
Sbjct: 26  AAAGGHVIVEWNVAVSVVSDCLPSYTSDDNSAIVATDSIKNTVYVKAKECTEIVS 80


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,858,829
Number of Sequences: 37544
Number of extensions: 155485
Number of successful extensions: 317
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)