Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_L24
         (402 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81576-5|CAB04646.2| 1696|Caenorhabditis elegans Hypothetical pr...    27   5.0  
AL031630-19|CAA20999.1|  123|Caenorhabditis elegans Hypothetical...    27   5.0  
AC024863-2|AAP31420.1|  366|Caenorhabditis elegans Prion-like-(q...    26   8.8  
AC024863-1|AAF60877.1|  481|Caenorhabditis elegans Prion-like-(q...    26   8.8  

>Z81576-5|CAB04646.2| 1696|Caenorhabditis elegans Hypothetical
           protein R10E8.6 protein.
          Length = 1696

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = -1

Query: 192 THNDTSPATDTIENRYYNRTMNSSKTVANSH*TNITINFDYL 67
           T+ D + A   +EN  Y         V +   T++T+N D++
Sbjct: 398 TYTDKNTAEKKVENFEYKSLETGCSAVVSERRTSLTVNLDHM 439


>AL031630-19|CAA20999.1|  123|Caenorhabditis elegans Hypothetical
           protein Y38H6C.22 protein.
          Length = 123

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 106 ICNCFTRVHCSIVISILDCIC 168
           ICNCF  +  ++VIS  D IC
Sbjct: 2   ICNCFLLIIVTLVISNCDGIC 22


>AC024863-2|AAP31420.1|  366|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 89,
           isoform b protein.
          Length = 366

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 1/80 (1%)
 Frame = -1

Query: 243 KNIGTAPGSDWTLLHTNTHNDTSPATDTIENR-YYNRTMNSSKTVANSH*TNITINFDYL 67
           +N G A  + W     N  N        I+NR  +N   N S   A S+ TN   N    
Sbjct: 67  QNYGNANSNSWGSAAANVANTLQTGYQNIQNRGLFN---NQSPFGATSNNTNSNSNKGVT 123

Query: 66  LRLR*RIDSRTFLYLPEKQT 7
           ++ + R  S     LP  QT
Sbjct: 124 IQFQLRGYSNPSSALPNSQT 143


>AC024863-1|AAF60877.1|  481|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 89,
           isoform a protein.
          Length = 481

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 1/80 (1%)
 Frame = -1

Query: 243 KNIGTAPGSDWTLLHTNTHNDTSPATDTIENR-YYNRTMNSSKTVANSH*TNITINFDYL 67
           +N G A  + W     N  N        I+NR  +N   N S   A S+ TN   N    
Sbjct: 67  QNYGNANSNSWGSAAANVANTLQTGYQNIQNRGLFN---NQSPFGATSNNTNSNSNKGVT 123

Query: 66  LRLR*RIDSRTFLYLPEKQT 7
           ++ + R  S     LP  QT
Sbjct: 124 IQFQLRGYSNPSSALPNSQT 143


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,851,400
Number of Sequences: 27780
Number of extensions: 143019
Number of successful extensions: 297
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 297
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)