Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_L23
         (593 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69885-5|CAA93756.2|  882|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AY064464-1|AAL40874.1|  882|Caenorhabditis elegans minibrain kin...    28   5.8  

>Z69885-5|CAA93756.2|  882|Caenorhabditis elegans Hypothetical
           protein T04C10.1 protein.
          Length = 882

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = +3

Query: 465 HRSELCKISKL*NVVYNLY--ITNSRFRGIS 551
           HR+ LC + +L  + YNLY  + N+ FRG+S
Sbjct: 399 HRAHLCLVFEL--LSYNLYDLLKNTSFRGVS 427


>AY064464-1|AAL40874.1|  882|Caenorhabditis elegans minibrain kinase
           protein.
          Length = 882

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = +3

Query: 465 HRSELCKISKL*NVVYNLY--ITNSRFRGIS 551
           HR+ LC + +L  + YNLY  + N+ FRG+S
Sbjct: 399 HRAHLCLVFEL--LSYNLYDLLKNTSFRGVS 427


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,208,003
Number of Sequences: 27780
Number of extensions: 268401
Number of successful extensions: 621
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)