Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_L22
         (326 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.14 |||aminoacyl-tRNA hydrolase |Schizosaccharomyces pom...    52   2e-08
SPBP8B7.24c |atg8||autophagy associated protein Atg8 |Schizosacc...    28   0.41 
SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S...    26   1.3  
SPBP8B7.05c |||carbonic anhydrase |Schizosaccharomyces pombe|chr...    25   2.9  
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    24   5.1  
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy...    24   5.1  
SPAC13A11.03 |mcp7|mug32|meiosis specific coiled-coil protein Mc...    23   8.8  

>SPAC19A8.14 |||aminoacyl-tRNA hydrolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 205

 Score = 52.4 bits (120), Expect = 2e-08
 Identities = 24/37 (64%), Positives = 29/37 (78%)
 Frame = +3

Query: 216 KLVLVVRTDLNMSKGKIAAQCGHAAVGAFEKALKRDP 326
           K+VLVVRTDL M+KGKIAAQC HAA+  ++ A   DP
Sbjct: 92  KMVLVVRTDLGMTKGKIAAQCAHAALACYKIASAVDP 128


>SPBP8B7.24c |atg8||autophagy associated protein Atg8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 27.9 bits (59), Expect = 0.41
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 314 EGFLKCTYSSMTTLGSYFPF 255
           +GFL  TYS   T G+ FPF
Sbjct: 102 DGFLYITYSGENTFGTVFPF 121


>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
           Sop2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 377

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 7/41 (17%)
 Frame = +2

Query: 158 WNHVRCWKEHKKV--CF-----KRRIQTCTSSKDRFKHEQR 259
           W H R + +H K+  C        RI TC+  ++ + +E+R
Sbjct: 45  WKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR 85


>SPBP8B7.05c |||carbonic anhydrase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.0 bits (52), Expect = 2.9
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = +3

Query: 180 KNIKKFVSREEYKLVLVVRTDLNMSKGKIAAQCGHAAVGAFEKAL 314
           +NI   V R +   + V+   + + K K    CGH   G    AL
Sbjct: 101 RNIANVVPRSDINALAVMEYSVTVLKVKHIIVCGHYGCGGVAAAL 145


>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 615

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -2

Query: 145 KANKDIPIHIPQPKPVRKDM 86
           K N ++  + PQP+PV++D+
Sbjct: 385 KKNIEVSANEPQPRPVKEDV 404


>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 138 TKIFQYIFHNLNL*EKIC*PPYFVSK 61
           TK  +Y FHNL   E    PP  +SK
Sbjct: 100 TKKNRYFFHNLKSHESYWEPPLEISK 125


>SPAC13A11.03 |mcp7|mug32|meiosis specific coiled-coil protein
           Mcp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 182 LSSIGHDSKIFFQSKQ 135
           L +I HDSK FFQ K+
Sbjct: 15  LEAIFHDSKDFFQLKE 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,267,909
Number of Sequences: 5004
Number of extensions: 24135
Number of successful extensions: 61
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)