Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_L22
(326 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0109 - 25624241-25624290,25624648-25624687,25624959-256250... 48 2e-06
04_04_1403 - 33292878-33292927,33293012-33293038,33293129-332931... 43 5e-05
01_05_0404 - 21833736-21834035,21834506-21834662,21834834-218350... 28 1.5
10_07_0113 - 12993300-12993413,12993493-12993775,12993856-129940... 27 3.5
04_04_1228 + 31888350-31892228,31892568-31893298,31893511-318935... 27 4.6
02_02_0141 - 7131260-7131581,7132124-7132430,7134018-7134076,713... 27 4.6
05_01_0334 - 2642998-2643063,2643125-2643169,2643552-2643617,264... 26 6.1
12_02_0653 + 21545862-21546584,21546661-21546696,21547182-215474... 26 8.0
08_01_0277 - 2262557-2264128 26 8.0
>05_06_0109 -
25624241-25624290,25624648-25624687,25624959-25625031,
25625123-25625200,25625533-25625569,25625892-25625952,
25626110-25626328,25626400-25626456
Length = 204
Score = 48.0 bits (109), Expect = 2e-06
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = +3
Query: 198 VSREEYKLVLVVRTDLNMSKGKIAAQCGHAAVGAFEKAL 314
+ EE K+VLVVR DL M GKIA+QC HAA G + + +
Sbjct: 85 IGGEELKMVLVVRKDLKMRAGKIASQCAHAATGLYAELM 123
>04_04_1403 -
33292878-33292927,33293012-33293038,33293129-33293198,
33293672-33293741,33294441-33294499,33294613-33295011
Length = 224
Score = 43.2 bits (97), Expect = 5e-05
Identities = 20/37 (54%), Positives = 25/37 (67%)
Frame = +3
Query: 207 EEYKLVLVVRTDLNMSKGKIAAQCGHAAVGAFEKALK 317
E++K+VLVVR DL M KGKIAAQC G + +K
Sbjct: 129 EDFKMVLVVRNDLKMGKGKIAAQCRWERCGQVKVVVK 165
>01_05_0404 -
21833736-21834035,21834506-21834662,21834834-21835080,
21835424-21835637,21836565-21836728,21836843-21836950,
21841596-21841797,21843676-21844194
Length = 636
Score = 28.3 bits (60), Expect = 1.5
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = -2
Query: 163 IPRYFFKANKDIPIHIPQPK 104
+ R+F ++N+ I IH+P+PK
Sbjct: 221 VDRFFLESNETIKIHMPKPK 240
>10_07_0113 -
12993300-12993413,12993493-12993775,12993856-12994026,
12994104-12994948,12995035-12995307,12995549-12995953
Length = 696
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 6/50 (12%)
Frame = +2
Query: 110 LWNMY------WNIFVCFEKISWNHVRCWKEHKKVCFKRRIQTCTSSKDR 241
LW++Y N+ C+ ++W HV C H + + T DR
Sbjct: 489 LWDLYRVRAIDTNLLKCYFLLTWKHVHCKAPHVALLDPAVVNETTLKNDR 538
>04_04_1228 + 31888350-31892228,31892568-31893298,31893511-31893586,
31894089-31894164,31894571-31894656,31895414-31895482,
31895579-31895588,31895711-31896207
Length = 1807
Score = 26.6 bits (56), Expect = 4.6
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +3
Query: 165 MSDAGKNIKKFVSREEYKLVLVVRTDLNMSKGKIAA 272
+ D G +KK Y L +V +TDLN KI A
Sbjct: 1054 IKDVGTRLKKLHYMSTYSLRIVGKTDLNGLDDKILA 1089
>02_02_0141 -
7131260-7131581,7132124-7132430,7134018-7134076,
7134586-7134667,7135972-7136047,7136382-7136443,
7136946-7137006
Length = 322
Score = 26.6 bits (56), Expect = 4.6
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +2
Query: 188 KKVCFKRRIQTCTSSKDRFKHEQRENSCPMWSCCCRCI*ESPQKG 322
KK+ + +R++ C S QR N P C + I + P KG
Sbjct: 244 KKITYNKRMKACKSYAAGLDMNQRSNHLP--KPCNKMIAKRPSKG 286
>05_01_0334 - 2642998-2643063,2643125-2643169,2643552-2643617,
2643625-2643730,2643770-2644349,2645780-2645871,
2645969-2646035,2646126-2646231,2646628-2646708,
2646789-2647058,2647158-2648788,2648834-2649385,
2650602-2651324,2651451-2651526
Length = 1486
Score = 26.2 bits (55), Expect = 6.1
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2
Query: 263 NSCPMWSCCCRCI*ESPQKGP 325
+ CP ++CCCR I S P
Sbjct: 1198 SKCPQFACCCRDITSSTVASP 1218
>12_02_0653 +
21545862-21546584,21546661-21546696,21547182-21547401,
21547590-21548025,21548103-21548273,21548354-21548636,
21548716-21548829,21549012-21549082,21549417-21549429
Length = 688
Score = 25.8 bits (54), Expect = 8.0
Identities = 7/20 (35%), Positives = 11/20 (55%)
Frame = +2
Query: 128 NIFVCFEKISWNHVRCWKEH 187
N+ C+ ++W HV C H
Sbjct: 465 NLLKCYSLLTWKHVHCKAPH 484
>08_01_0277 - 2262557-2264128
Length = 523
Score = 25.8 bits (54), Expect = 8.0
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = -2
Query: 325 GSLLRAFSNAPTAA*PHWAAIFPLLMFKXXXXXXXXXXXXLETNFFMFFPASD 167
G LLR +AP P +A F + M + NFF FFPA++
Sbjct: 60 GYLLRLLQSAP----PSSSAPFDIAMKELREAVVPGMTHWASPNFFAFFPATN 108
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,443,126
Number of Sequences: 37544
Number of extensions: 130743
Number of successful extensions: 287
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 287
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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