Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_L22
         (326 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript...    26   0.41 
AY873992-1|AAW71999.1|  259|Anopheles gambiae nanos protein.           23   2.2  
AY583530-1|AAS93544.1|  260|Anopheles gambiae NOS protein protein.     23   2.2  
AY903308-1|AAX48940.1|  241|Anopheles gambiae female-specific do...    23   2.9  
AY903307-1|AAX48939.1|  283|Anopheles gambiae male-specific doub...    23   2.9  

>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1168

 Score = 25.8 bits (54), Expect = 0.41
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +2

Query: 197 CFKRRIQTCTSSKDRFKHEQRENSCPMW 280
           C+ R+  +  SS++  + E++E S  +W
Sbjct: 859 CYNRQQSSPDSSREAIRQEEKETSLQLW 886


>AY873992-1|AAW71999.1|  259|Anopheles gambiae nanos protein.
          Length = 259

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 13/48 (27%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
 Frame = +2

Query: 161 NHVRCWKEHKKVCFKRRIQTCTSSKDRFKHEQRENSCPMWS--CCCRC 298
           N   C  +H   CF  +         R K E    +CP+     C RC
Sbjct: 147 NKSTCELDHCVFCFNNKADREVYESHRCKDEAGNVTCPVLQTFVCMRC 194


>AY583530-1|AAS93544.1|  260|Anopheles gambiae NOS protein protein.
          Length = 260

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 13/48 (27%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
 Frame = +2

Query: 161 NHVRCWKEHKKVCFKRRIQTCTSSKDRFKHEQRENSCPMWS--CCCRC 298
           N   C  +H   CF  +         R K E    +CP+     C RC
Sbjct: 148 NKSTCELDHCVFCFNNKADREVYESHRCKDEAGNVTCPVLQTFVCMRC 195


>AY903308-1|AAX48940.1|  241|Anopheles gambiae female-specific
           doublesex protein protein.
          Length = 241

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 6/25 (24%), Positives = 14/25 (56%)
 Frame = -2

Query: 178 PASDMIPRYFFKANKDIPIHIPQPK 104
           P +  +P    + +  +P H+P+P+
Sbjct: 124 PGTSSVPLTIHRRSPGVPHHVPEPQ 148


>AY903307-1|AAX48939.1|  283|Anopheles gambiae male-specific
           doublesex protein protein.
          Length = 283

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 6/25 (24%), Positives = 14/25 (56%)
 Frame = -2

Query: 178 PASDMIPRYFFKANKDIPIHIPQPK 104
           P +  +P    + +  +P H+P+P+
Sbjct: 124 PGTSSVPLTIHRRSPGVPHHVPEPQ 148


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 315,795
Number of Sequences: 2352
Number of extensions: 5709
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 563,979
effective HSP length: 56
effective length of database: 432,267
effective search space used: 22477884
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)