Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_L22
         (326 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067936-7|AAC19215.1|  316|Caenorhabditis elegans Hypothetical ...    42   1e-04
U29244-17|AAC71097.2|  314|Caenorhabditis elegans Galectin prote...    27   2.4  
AB038506-1|BAB11971.1|  314|Caenorhabditis elegans galectin LEC-...    27   2.4  
AF000195-8|AAN84853.1|  400|Caenorhabditis elegans Oxysterol bin...    26   5.6  
AF000195-7|AAC24270.1|  676|Caenorhabditis elegans Oxysterol bin...    26   5.6  
U41012-5|AAR12968.1|  154|Caenorhabditis elegans Hypothetical pr...    26   7.4  
U80838-3|AAC71113.1|  453|Caenorhabditis elegans Abnormal cell l...    25   9.7  
U80838-1|AAU05570.1|  597|Caenorhabditis elegans Abnormal cell l...    25   9.7  
AF183400-1|AAF13188.1|  453|Caenorhabditis elegans LIN-42 protein.     25   9.7  

>AF067936-7|AAC19215.1|  316|Caenorhabditis elegans Hypothetical
           protein C24G6.8 protein.
          Length = 316

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 18/42 (42%), Positives = 26/42 (61%)
 Frame = +3

Query: 198 VSREEYKLVLVVRTDLNMSKGKIAAQCGHAAVGAFEKALKRD 323
           V+   +K+VLV    L M  GKIAAQ GHA +G + +A+  +
Sbjct: 196 VAGRTHKMVLVANMSLKMGTGKIAAQVGHATLGVYRQAMNSE 237


>U29244-17|AAC71097.2|  314|Caenorhabditis elegans Galectin protein
           5 protein.
          Length = 314

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +3

Query: 132 SLFALKKYLGIMSDAGK-NIKKFVSREEYKLVLVVRTDLNMSKGK 263
           SL AL    G  SD  + N KKF+  +EYKL    R    ++ G+
Sbjct: 10  SLAALVSCQGDASDPKETNYKKFIGEQEYKLPFKTRVSEPLAVGQ 54


>AB038506-1|BAB11971.1|  314|Caenorhabditis elegans galectin LEC-5
           protein.
          Length = 314

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +3

Query: 132 SLFALKKYLGIMSDAGK-NIKKFVSREEYKLVLVVRTDLNMSKGK 263
           SL AL    G  SD  + N KKF+  +EYKL    R    ++ G+
Sbjct: 10  SLAALVSCQGDASDPKETNYKKFIGEQEYKLPFKTRVSEPLAVGQ 54


>AF000195-8|AAN84853.1|  400|Caenorhabditis elegans Oxysterol
           binding protein (osbp)related protein 4, isoform b
           protein.
          Length = 400

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 170 RCWKEHKKVCFKRRIQTCTSSKDRFKHEQRENS 268
           R W+       + RIQT T+SK   +  QR+ +
Sbjct: 332 RLWRHVTAALLRNRIQTATTSKRFIEQRQRKEA 364


>AF000195-7|AAC24270.1|  676|Caenorhabditis elegans Oxysterol
           binding protein (osbp)related protein 4, isoform a
           protein.
          Length = 676

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 170 RCWKEHKKVCFKRRIQTCTSSKDRFKHEQRENS 268
           R W+       + RIQT T+SK   +  QR+ +
Sbjct: 608 RLWRHVTAALLRNRIQTATTSKRFIEQRQRKEA 640


>U41012-5|AAR12968.1|  154|Caenorhabditis elegans Hypothetical
           protein C06A6.7 protein.
          Length = 154

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -1

Query: 200 NKLFYVLSSIGHDSKIFF-QSKQRYSNTYSTT*TCEKRYVNLHISFRSNDDI 48
           +K F  L     DS+ FF Q     S T+ T    EK+++ +++++ +NDD+
Sbjct: 43  DKFFTPLVGNFADSEHFFNQWTSMSSATHFTFRIKEKKFLTVNVTYYNNDDM 94


>U80838-3|AAC71113.1|  453|Caenorhabditis elegans Abnormal cell
           lineage protein 42,isoform c protein.
          Length = 453

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +3

Query: 138 FALKKYLGIMSD--AGKNIKKFVSREEYKLVLVVRTDLNMSKGKI 266
           +A   YLG++     GK++  FV   +  +V     DL+ S+GKI
Sbjct: 184 YASIPYLGLLPTDLIGKSLLAFVYSPDVHVVRQAHIDLHNSRGKI 228


>U80838-1|AAU05570.1|  597|Caenorhabditis elegans Abnormal cell
           lineage protein 42,isoform b protein.
          Length = 597

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +3

Query: 138 FALKKYLGIMSD--AGKNIKKFVSREEYKLVLVVRTDLNMSKGKI 266
           +A   YLG++     GK++  FV   +  +V     DL+ S+GKI
Sbjct: 184 YASIPYLGLLPTDLIGKSLLAFVYSPDVHVVRQAHIDLHNSRGKI 228


>AF183400-1|AAF13188.1|  453|Caenorhabditis elegans LIN-42 protein.
          Length = 453

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +3

Query: 138 FALKKYLGIMSD--AGKNIKKFVSREEYKLVLVVRTDLNMSKGKI 266
           +A   YLG++     GK++  FV   +  +V     DL+ S+GKI
Sbjct: 184 YASIPYLGLLPTDLIGKSLLAFVYSPDVHVVRQAHIDLHNSRGKI 228


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,914,978
Number of Sequences: 27780
Number of extensions: 135673
Number of successful extensions: 358
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 358
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 398409266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)